Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016409.1-P | Field mustard | nucleus | 99.87 | 100.0 |
| CDY58587 | Canola | cytosol, endoplasmic reticulum, nucleus | 88.29 | 91.99 |
| CDY08183 | Canola | cytosol, nucleus, vacuole | 80.48 | 85.66 |
| CDY04665 | Canola | cytosol, nucleus, vacuole | 79.97 | 85.23 |
| AT1G21700.1 | Thale cress | nucleus | 82.62 | 81.29 |
| VIT_18s0001g02160.t01 | Wine grape | nucleus | 29.97 | 53.72 |
| KRH53271 | Soybean | nucleus | 52.14 | 52.74 |
| KRH64632 | Soybean | nucleus | 52.02 | 52.61 |
| KRH17984 | Soybean | nucleus | 47.36 | 49.15 |
| KRH16394 | Soybean | nucleus | 47.61 | 48.71 |
| Solyc06g060120.2.1 | Tomato | nucleus | 48.49 | 48.67 |
| GSMUA_Achr8P30120_001 | Banana | nucleus | 43.95 | 44.69 |
| GSMUA_Achr6P25400_001 | Banana | nucleus | 43.95 | 44.52 |
| VIT_18s0001g02190.t01 | Wine grape | nucleus | 20.15 | 44.44 |
| OQU83031 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 43.32 | 44.33 |
| Os11t0183700-01 | Rice | mitochondrion | 42.95 | 43.49 |
| Zm00001d000110_P003 | Maize | mitochondrion | 42.7 | 43.24 |
| EES15751 | Sorghum | nucleus | 41.81 | 42.89 |
| Zm00001d041847_P002 | Maize | nucleus | 41.56 | 42.69 |
| TraesCS5D01G128700.1 | Wheat | nucleus | 42.07 | 42.44 |
| TraesCS4B01G097500.1 | Wheat | cytosol, mitochondrion, nucleus | 26.07 | 42.42 |
| HORVU4Hr1G017950.27 | Barley | nucleus | 28.34 | 42.29 |
| TraesCS5B01G119800.1 | Wheat | nucleus | 42.19 | 42.24 |
| TraesCS5A01G113500.1 | Wheat | nucleus | 42.07 | 42.23 |
| TraesCS4A01G218700.1 | Wheat | cytosol, nucleus, plastid | 23.05 | 41.97 |
| TraesCS4D01G093900.2 | Wheat | cytosol, nucleus, plastid | 40.43 | 41.47 |
| HORVU5Hr1G037060.1 | Barley | nucleus, plastid | 42.32 | 40.58 |
| TraesCS4B01G097600.1 | Wheat | nucleus | 11.21 | 39.04 |
| Os12t0176700-00 | Rice | nucleus | 39.29 | 36.62 |
| CDY23721 | Canola | plastid | 13.48 | 23.31 |
| CDX83324 | Canola | nucleus | 14.23 | 22.97 |
| CDY37705 | Canola | plastid | 13.1 | 22.66 |
| CDX95728 | Canola | nucleus | 13.85 | 22.09 |
| CDX80122 | Canola | nucleus | 13.48 | 20.9 |
| CDY66036 | Canola | nucleus | 13.35 | 20.42 |
| CDX75433 | Canola | nucleus | 20.65 | 17.54 |
| CDY46250 | Canola | nucleus | 20.03 | 16.79 |
| CDX76281 | Canola | nucleus | 20.15 | 16.6 |
Protein Annotations
| Gene3D:1.10.10.10 | Gene3D:1.10.10.60 | MapMan:12.4.2.1 | GO:A0A078EB50 | EnsemblPlants:CDX96578 | ProteinID:CDX96578 |
| ProteinID:CDX96578.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00102774001 | InterPro:Homeobox-like_sf | InterPro:IPR007526 | InterPro:IPR017884 | InterPro:IPR036388 |
| PFAM:PF00249 | PFAM:PF04433 | PFAM:PF16495 | PFscan:PS50934 | PFscan:PS51293 | PANTHER:PTHR12802 |
| PANTHER:PTHR12802:SF61 | InterPro:SANT/Myb | InterPro:SANT_dom | SMART:SM00717 | InterPro:SMARCC_C | SUPFAM:SSF46689 |
| InterPro:SWIRM | UniParc:UPI0004EDEEAB | InterPro:WH-like_DNA-bd_sf | SEG:seg | : | : |
Description
BnaA08g21210D
Coordinates
chrLK031895:+:101276..105047
Molecular Weight (calculated)
86288.0 Da
IEP (calculated)
4.963
GRAVY (calculated)
-0.491
Length
794 amino acids
Sequence
(BLAST)
(BLAST)
001: MPATEDRRGK WKRRRRGGRR PKQEEEDIEE EDDEEMEEAD NNADELHQNG AAAPDPGPGT SEVVEDSGER ISGFPSVVRR VVVRPHASVT AVVAAERGCL
101: MGEVKGQGLL LPALENISFG QLQALSSVPA DSLCFDPERS DGAAYVISPP SIMEGEGVVK RFGDKVHVLP MHSADWFAPN TVDRLERQVV PQYFCGKSPN
201: HTPESYMRFR NAIVSKYMDN PERTLTISDC QGLVDGADTE DLARVFRFLD HWGIINYCAT SQCHPGPSKG ASDVREDANG EVHVPSAALT SIDSLIRFDK
301: PICRHKADEV SSSLPSSDVD LPDLDIRIRE HLCDNHCNHC SRPLPTVYFQ SQKKEDVLLC SDCFHDAKFV VGHSCIDFVR VDTSKDYRDQ DGENWSDQET
401: LLLLEAVELY NENWVQIADH VGSKSKAQCI LHFLRLPVED GLLDNVELPG VTDPANPTNG YDHRGGASNG ALPGTSEQDS DTEINLPFVK SPNPVMALVA
501: FLASAVGPRV AASCAHECLT VLSADDRLKS DGLQGKNPTM LDGENQQLDD NSGAQKTSCQ NGAEAPTPLP QDKVMAAFKA GLSAASTKAK LFADHEEREI
601: QRLSANIVNH QLKRMELKLK QFAEIETLLM KECEQVEKTR QRFAAERARM LSARFGSAGG IAPQANSNNL QGMSLSTGGG NSINTLLQQQ LQQQQVSAGS
701: SQPSMIPGFS NNPQVHAQMQ FMARQQQQQA FSFGPRLPLN AIQTNAGSTA SPNVMFGLNN PAGGAAASIN QTSFSNPMVR SSTGSGSGSG LGLN
101: MGEVKGQGLL LPALENISFG QLQALSSVPA DSLCFDPERS DGAAYVISPP SIMEGEGVVK RFGDKVHVLP MHSADWFAPN TVDRLERQVV PQYFCGKSPN
201: HTPESYMRFR NAIVSKYMDN PERTLTISDC QGLVDGADTE DLARVFRFLD HWGIINYCAT SQCHPGPSKG ASDVREDANG EVHVPSAALT SIDSLIRFDK
301: PICRHKADEV SSSLPSSDVD LPDLDIRIRE HLCDNHCNHC SRPLPTVYFQ SQKKEDVLLC SDCFHDAKFV VGHSCIDFVR VDTSKDYRDQ DGENWSDQET
401: LLLLEAVELY NENWVQIADH VGSKSKAQCI LHFLRLPVED GLLDNVELPG VTDPANPTNG YDHRGGASNG ALPGTSEQDS DTEINLPFVK SPNPVMALVA
501: FLASAVGPRV AASCAHECLT VLSADDRLKS DGLQGKNPTM LDGENQQLDD NSGAQKTSCQ NGAEAPTPLP QDKVMAAFKA GLSAASTKAK LFADHEEREI
601: QRLSANIVNH QLKRMELKLK QFAEIETLLM KECEQVEKTR QRFAAERARM LSARFGSAGG IAPQANSNNL QGMSLSTGGG NSINTLLQQQ LQQQQVSAGS
701: SQPSMIPGFS NNPQVHAQMQ FMARQQQQQA FSFGPRLPLN AIQTNAGSTA SPNVMFGLNN PAGGAAASIN QTSFSNPMVR SSTGSGSGSG LGLN
001: MPASEDRRGK WKRKKRGGLS AARKPKQEEE DMEEEDEENN NNNNEEMDDV ENADELQQNG GATPDPGLGI GEVVEDSGSR ISDFPAVVKR VVIRPHASVM
101: AVVAAERAGL IGETRGQGSL PALENISFGQ LQALSTVPAD SLDLERSDGS SSAYVISPPP IMDGEGVVKR FGDLVHVLPM HSDWFAPNTV DRLERQVVPQ
201: FFSGKSPNHT PESYMEFRNA IVSKYVENPE KTLTISDCQG LVDGVDIEDF ARVFRFLDHW GIINYCATAQ SHPGPLRDVS DVREDTNGEV NVPSAALTSI
301: DSLIKFDKPN CRHKGGEVYS SLPSLDGDSP DLDIRIREHL CDSHCNHCSR PLPTVYFQSQ KKGDILLCCD CFHHGRFVVG HSCLDFVRVD PMKFYGDQDG
401: DNWTDQETLL LLEAVELYNE NWVQIADHVG SKSKAQCILH FLRLPVEDGL LDNVEVSGVT NTENPTNGYD HKGTDSNGDL PGYSEQGSDT EIKLPFVKSP
501: NPVMALVAFL ASAVGPRVAA SCAHESLSVL SEDDRMKSEG MQGKEASLLD GENQQQDGAH KTSSQNGAEA QTPLPQDKVM AAFRAGLSAA ATKAKLFADH
601: EEREIQRLSA NIVNHQLKRM ELKLKQFAEI ETLLMKECEQ VEKTRQRFSA ERARMLSARF GSPGGISPQT NNLQGMSLST GGNNINSLMH QQHQQQQASA
701: TSQPSIIPGF SNNPQVQAQM HFMARQQQQQ QQQQQQQQQA FSFGPRLPLN AIQTNAGSTA SPNVMFGNNQ LNNPAAAGAA SINQPSFSHP MVRSSTGSGS
801: GSGLGLN
101: AVVAAERAGL IGETRGQGSL PALENISFGQ LQALSTVPAD SLDLERSDGS SSAYVISPPP IMDGEGVVKR FGDLVHVLPM HSDWFAPNTV DRLERQVVPQ
201: FFSGKSPNHT PESYMEFRNA IVSKYVENPE KTLTISDCQG LVDGVDIEDF ARVFRFLDHW GIINYCATAQ SHPGPLRDVS DVREDTNGEV NVPSAALTSI
301: DSLIKFDKPN CRHKGGEVYS SLPSLDGDSP DLDIRIREHL CDSHCNHCSR PLPTVYFQSQ KKGDILLCCD CFHHGRFVVG HSCLDFVRVD PMKFYGDQDG
401: DNWTDQETLL LLEAVELYNE NWVQIADHVG SKSKAQCILH FLRLPVEDGL LDNVEVSGVT NTENPTNGYD HKGTDSNGDL PGYSEQGSDT EIKLPFVKSP
501: NPVMALVAFL ASAVGPRVAA SCAHESLSVL SEDDRMKSEG MQGKEASLLD GENQQQDGAH KTSSQNGAEA QTPLPQDKVM AAFRAGLSAA ATKAKLFADH
601: EEREIQRLSA NIVNHQLKRM ELKLKQFAEI ETLLMKECEQ VEKTRQRFSA ERARMLSARF GSPGGISPQT NNLQGMSLST GGNNINSLMH QQHQQQQASA
701: TSQPSIIPGF SNNPQVQAQM HFMARQQQQQ QQQQQQQQQA FSFGPRLPLN AIQTNAGSTA SPNVMFGNNQ LNNPAAAGAA SINQPSFSHP MVRSSTGSGS
801: GSGLGLN
Arabidopsis Description
SWI3CSWI/SNF complex subunit SWI3C [Source:UniProtKB/Swiss-Prot;Acc:Q9XI07]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.