Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_18s0001g02160.t01 | Wine grape | nucleus | 40.79 | 20.99 |
| TraesCS4D01G093900.2 | Wheat | cytosol, nucleus, plastid | 56.58 | 16.67 |
| OQU83031 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 55.7 | 16.37 |
| Os11t0183700-01 | Rice | mitochondrion | 53.07 | 15.43 |
| Zm00001d000110_P003 | Maize | mitochondrion | 51.75 | 15.05 |
| TraesCS5B01G119800.1 | Wheat | nucleus | 49.56 | 14.25 |
| Bra017943.1-P | Field mustard | cytosol, endoplasmic reticulum, nucleus | 37.72 | 13.94 |
| GSMUA_Achr8P30120_001 | Banana | nucleus | 46.05 | 13.44 |
| GSMUA_Achr6P25400_001 | Banana | nucleus | 45.61 | 13.27 |
| KRH64632 | Soybean | nucleus | 40.35 | 11.72 |
| KRH53271 | Soybean | nucleus | 40.35 | 11.72 |
| CDY04665 | Canola | cytosol, nucleus, vacuole | 37.72 | 11.54 |
| CDY08183 | Canola | cytosol, nucleus, vacuole | 37.72 | 11.53 |
| CDY58587 | Canola | cytosol, endoplasmic reticulum, nucleus | 38.16 | 11.42 |
| AT1G21700.1 | Thale cress | nucleus | 39.91 | 11.28 |
| Bra016409.1-P | Field mustard | nucleus | 39.04 | 11.22 |
| CDX96578 | Canola | nucleus | 39.04 | 11.21 |
| Solyc06g060120.2.1 | Tomato | nucleus | 38.6 | 11.13 |
| KRH16394 | Soybean | nucleus | 35.09 | 10.31 |
| KRH17984 | Soybean | nucleus | 32.89 | 9.8 |
| TraesCS2B01G356600.1 | Wheat | nucleus | 12.72 | 5.21 |
| TraesCS4B01G053000.2 | Wheat | nucleus | 16.67 | 4.0 |
| TraesCS6B01G195400.1 | Wheat | plastid | 6.58 | 3.04 |
| VIT_18s0001g02190.t01 | Wine grape | nucleus | 4.39 | 2.78 |
| HORVU4Hr1G017950.27 | Barley | nucleus | 2.63 | 1.13 |
| TraesCS4A01G218700.1 | Wheat | cytosol, nucleus, plastid | 1.75 | 0.92 |
| TraesCS4B01G097500.1 | Wheat | cytosol, mitochondrion, nucleus | 1.75 | 0.82 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G097600.1 | EnsemblPlantsGene:TraesCS4B01G097600 | InterPro:SMARCC_C | ncoils:Coil | PANTHER:PTHR12802 | PANTHER:PTHR12802:SF61 |
| PFAM:PF16495 | MapMan:12.4.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chr4B:+:102391768..102407636
Molecular Weight (calculated)
24870.9 Da
IEP (calculated)
9.913
GRAVY (calculated)
-0.442
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MHTDDRAHGA HPNFCGHNGA SSSISLENVK HATLCGLSAA AIKSKLFADQ EEREIQRLVA TMINHQLKRL ELKLKQFAEV ETLLLKECEQ VERARQRISA
101: GRIQAMRACS NPLETCLPTS GSSTMSPNPM NISPRPLAVP RSMAEATVQA AYPNNMQGQG HPQMPFVQRR PQMLSFGPRL PFSANQTQPL AQAPNIMFSS
201: GAMLGSVTPN HHHQLLRSSS SGNNSTLG
101: GRIQAMRACS NPLETCLPTS GSSTMSPNPM NISPRPLAVP RSMAEATVQA AYPNNMQGQG HPQMPFVQRR PQMLSFGPRL PFSANQTQPL AQAPNIMFSS
201: GAMLGSVTPN HHHQLLRSSS SGNNSTLG
001: MPASEDRRGK WKRKKRGGLS AARKPKQEEE DMEEEDEENN NNNNEEMDDV ENADELQQNG GATPDPGLGI GEVVEDSGSR ISDFPAVVKR VVIRPHASVM
101: AVVAAERAGL IGETRGQGSL PALENISFGQ LQALSTVPAD SLDLERSDGS SSAYVISPPP IMDGEGVVKR FGDLVHVLPM HSDWFAPNTV DRLERQVVPQ
201: FFSGKSPNHT PESYMEFRNA IVSKYVENPE KTLTISDCQG LVDGVDIEDF ARVFRFLDHW GIINYCATAQ SHPGPLRDVS DVREDTNGEV NVPSAALTSI
301: DSLIKFDKPN CRHKGGEVYS SLPSLDGDSP DLDIRIREHL CDSHCNHCSR PLPTVYFQSQ KKGDILLCCD CFHHGRFVVG HSCLDFVRVD PMKFYGDQDG
401: DNWTDQETLL LLEAVELYNE NWVQIADHVG SKSKAQCILH FLRLPVEDGL LDNVEVSGVT NTENPTNGYD HKGTDSNGDL PGYSEQGSDT EIKLPFVKSP
501: NPVMALVAFL ASAVGPRVAA SCAHESLSVL SEDDRMKSEG MQGKEASLLD GENQQQDGAH KTSSQNGAEA QTPLPQDKVM AAFRAGLSAA ATKAKLFADH
601: EEREIQRLSA NIVNHQLKRM ELKLKQFAEI ETLLMKECEQ VEKTRQRFSA ERARMLSARF GSPGGISPQT NNLQGMSLST GGNNINSLMH QQHQQQQASA
701: TSQPSIIPGF SNNPQVQAQM HFMARQQQQQ QQQQQQQQQA FSFGPRLPLN AIQTNAGSTA SPNVMFGNNQ LNNPAAAGAA SINQPSFSHP MVRSSTGSGS
801: GSGLGLN
101: AVVAAERAGL IGETRGQGSL PALENISFGQ LQALSTVPAD SLDLERSDGS SSAYVISPPP IMDGEGVVKR FGDLVHVLPM HSDWFAPNTV DRLERQVVPQ
201: FFSGKSPNHT PESYMEFRNA IVSKYVENPE KTLTISDCQG LVDGVDIEDF ARVFRFLDHW GIINYCATAQ SHPGPLRDVS DVREDTNGEV NVPSAALTSI
301: DSLIKFDKPN CRHKGGEVYS SLPSLDGDSP DLDIRIREHL CDSHCNHCSR PLPTVYFQSQ KKGDILLCCD CFHHGRFVVG HSCLDFVRVD PMKFYGDQDG
401: DNWTDQETLL LLEAVELYNE NWVQIADHVG SKSKAQCILH FLRLPVEDGL LDNVEVSGVT NTENPTNGYD HKGTDSNGDL PGYSEQGSDT EIKLPFVKSP
501: NPVMALVAFL ASAVGPRVAA SCAHESLSVL SEDDRMKSEG MQGKEASLLD GENQQQDGAH KTSSQNGAEA QTPLPQDKVM AAFRAGLSAA ATKAKLFADH
601: EEREIQRLSA NIVNHQLKRM ELKLKQFAEI ETLLMKECEQ VEKTRQRFSA ERARMLSARF GSPGGISPQT NNLQGMSLST GGNNINSLMH QQHQQQQASA
701: TSQPSIIPGF SNNPQVQAQM HFMARQQQQQ QQQQQQQQQA FSFGPRLPLN AIQTNAGSTA SPNVMFGNNQ LNNPAAAGAA SINQPSFSHP MVRSSTGSGS
801: GSGLGLN
Arabidopsis Description
SWI3CSWI/SNF complex subunit SWI3C [Source:UniProtKB/Swiss-Prot;Acc:Q9XI07]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.