Factsheet for TraesCS4A01G218700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

mitochondrion 2
cytosol 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2B01G356600.1
TraesCS2D01G337400.1
TraesCS6A01G167800.1
TraesCS6B01G195400.1
TraesCS6D01G156700.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G21700.1	TraesCS6A01G167800.1	AT2G33610.1	12140326
AT1G21700.1	TraesCS6B01G195400.1	AT2G33610.1	12140326
AT1G21700.1	TraesCS6D01G156700.3	AT2G33610.1	12140326
AT1G21700.1	TraesCS6A01G167800.1	AT2G33610.1	16845477
AT1G21700.1	TraesCS6B01G195400.1	AT2G33610.1	16845477
AT1G21700.1	TraesCS6D01G156700.3	AT2G33610.1	16845477
AT1G21700.1	TraesCS2B01G356600.1	AT2G47620.1	16055636
AT1G21700.1	TraesCS2D01G337400.1	AT2G47620.1	16055636

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G097500.1	Wheat	cytosol, mitochondrion, nucleus	92.66	82.79
HORVU4Hr1G017950.27	Barley	nucleus	88.99	72.93
TraesCS4D01G093900.2	Wheat	cytosol, nucleus, plastid	94.72	53.36
Os11t0183700-01	Rice	mitochondrion	77.29	42.98
OQU83031	Sorghum	cytosol, mitochondrion, nucleus, plastid	75.0	42.14
Zm00001d000110_P003	Maize	mitochondrion	73.85	41.07
TraesCS5A01G113500.1	Wheat	nucleus	67.89	37.42
VIT_18s0001g02190.t01	Wine grape	nucleus	28.9	35.0
GSMUA_Achr6P25400_001	Banana	nucleus	59.63	33.16
GSMUA_Achr8P30120_001	Banana	nucleus	57.8	32.27
KRH53271	Soybean	nucleus	47.02	26.11
KRH64632	Soybean	nucleus	46.33	25.73
KRH16394	Soybean	nucleus	44.04	24.74
KRH17984	Soybean	nucleus	43.35	24.71
Solyc06g060120.2.1	Tomato	nucleus	43.58	24.02
Bra016409.1-P	Field mustard	nucleus	41.97	23.08
CDX96578	Canola	nucleus	41.97	23.05
CDY08183	Canola	cytosol, nucleus, vacuole	39.22	22.92
CDY58587	Canola	cytosol, endoplasmic reticulum, nucleus	39.45	22.57
AT1G21700.1	Thale cress	nucleus	41.74	22.55
CDY04665	Canola	cytosol, nucleus, vacuole	38.53	22.55
Bra017943.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	30.28	21.39
TraesCS6A01G167800.1	Wheat	plastid	15.6	13.6
TraesCS4A01G261600.1	Wheat	nucleus	20.18	9.49
VIT_18s0001g02160.t01	Wine grape	nucleus	9.17	9.03
TraesCS4B01G097600.1	Wheat	nucleus	0.92	1.75

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	MapMan:12.4.2.1	Gene3D:3.30.60.90	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	InterPro:Homeobox-like_sf	InterPro:IPR007526	InterPro:IPR017884
InterPro:IPR036388	PFAM:PF00249	PFAM:PF04433	PFscan:PS50934	PFscan:PS51293	PANTHER:PTHR12802
PANTHER:PTHR12802:SF61	InterPro:SANT/Myb	InterPro:SANT_dom	SUPFAM:SSF46689	InterPro:SWIRM	EnsemblPlantsGene:TraesCS4A01G218700
EnsemblPlants:TraesCS4A01G218700.1	InterPro:WH-like_DNA-bd_sf	TIGR:cd00167	SEG:seg	:	:

Description

No Description!

Coordinates

chr4A:+:521263892..521272090

Molecular Weight (calculated)

47811.2 Da

IEP (calculated)

5.964

GRAVY (calculated)

-0.361

Length

436 amino acids

Sequence
(BLAST)

001: MPRKASCTPD SRTKWRKRKR NSDAVPLPLA AADHSDNSDS AADNAVDNAD DEILAGAAAR DPVPDPREAE LLSLAEVISA FPAATRRTVN RPHPSVMALA
101: ERSAYVGDVS AAAPPPLENI SHGQLQVLSV ALPDHPSLST DPDRPSSYVC TPPPLMEGHG VHKQFQGRLH VVPKHSEWFS PGVVHRLERQ VVPHFFTGKS
201: PGHTPEKFII LRNKIIAKYL ENPCKRLAFA ECQGFVVNTG ELYDLSRIVR FLDTWGIINY LAVGLVHQGL RVAASLLIKE PAGELQLLTA PLKSIDGLVL
301: FDRPKCSLQA DNISSLASSS SNSEVVDFDA GAEFTELDGK IRERLSESYC SYCSQSLRSL RYQSQKEADI ALCSDCFHDA RYVIGHSSLD LQRVDGAKDG
401: SENEGDNWTD QETLLLLEGI EKHKDNWNSI ADHVGT

Best Arabidopsis Sequence Match ( AT1G21700.1 )
(BLAST)

001: MPASEDRRGK WKRKKRGGLS AARKPKQEEE DMEEEDEENN NNNNEEMDDV ENADELQQNG GATPDPGLGI GEVVEDSGSR ISDFPAVVKR VVIRPHASVM
101: AVVAAERAGL IGETRGQGSL PALENISFGQ LQALSTVPAD SLDLERSDGS SSAYVISPPP IMDGEGVVKR FGDLVHVLPM HSDWFAPNTV DRLERQVVPQ
201: FFSGKSPNHT PESYMEFRNA IVSKYVENPE KTLTISDCQG LVDGVDIEDF ARVFRFLDHW GIINYCATAQ SHPGPLRDVS DVREDTNGEV NVPSAALTSI
301: DSLIKFDKPN CRHKGGEVYS SLPSLDGDSP DLDIRIREHL CDSHCNHCSR PLPTVYFQSQ KKGDILLCCD CFHHGRFVVG HSCLDFVRVD PMKFYGDQDG
401: DNWTDQETLL LLEAVELYNE NWVQIADHVG SKSKAQCILH FLRLPVEDGL LDNVEVSGVT NTENPTNGYD HKGTDSNGDL PGYSEQGSDT EIKLPFVKSP
501: NPVMALVAFL ASAVGPRVAA SCAHESLSVL SEDDRMKSEG MQGKEASLLD GENQQQDGAH KTSSQNGAEA QTPLPQDKVM AAFRAGLSAA ATKAKLFADH
601: EEREIQRLSA NIVNHQLKRM ELKLKQFAEI ETLLMKECEQ VEKTRQRFSA ERARMLSARF GSPGGISPQT NNLQGMSLST GGNNINSLMH QQHQQQQASA
701: TSQPSIIPGF SNNPQVQAQM HFMARQQQQQ QQQQQQQQQA FSFGPRLPLN AIQTNAGSTA SPNVMFGNNQ LNNPAAAGAA SINQPSFSHP MVRSSTGSGS
801: GSGLGLN

Arabidopsis Description

SWI3CSWI/SNF complex subunit SWI3C [Source:UniProtKB/Swiss-Prot;Acc:Q9XI07]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.