CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, nucleus
Any Predictor:	cytosol, endoplasmic reticulum, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX80122
CDX83324
CDX95728
CDY23721
CDY37705
CDY66036

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G21700.1	CDY23721	AT2G33610.1	12140326
AT1G21700.1	CDY37705	AT2G33610.1	12140326
AT1G21700.1	CDY23721	AT2G33610.1	16845477
AT1G21700.1	CDY37705	AT2G33610.1	16845477
AT1G21700.1	CDX80122	AT2G47620.1	16055636
AT1G21700.1	CDX83324	AT2G47620.1	16055636
AT1G21700.1	CDX95728	AT2G47620.1	16055636
AT1G21700.1	CDY66036	AT2G47620.1	16055636

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96578	Canola	nucleus	91.99	88.29
CDY08183	Canola	cytosol, nucleus, vacuole	83.99	85.79
CDY04665	Canola	cytosol, nucleus, vacuole	83.33	85.23
AT1G21700.1	Thale cress	nucleus	82.28	77.7
VIT_18s0001g02160.t01	Wine grape	nucleus	31.63	54.4
KRH53271	Soybean	nucleus	52.89	51.34
KRH64632	Soybean	nucleus	52.36	50.83
KRH17984	Soybean	nucleus	48.16	47.97
KRH16394	Soybean	nucleus	48.69	47.81
Solyc06g060120.2.1	Tomato	nucleus	49.21	47.41
VIT_18s0001g02190.t01	Wine grape	nucleus	20.73	43.89
GSMUA_Achr8P30120_001	Banana	nucleus	44.49	43.41
GSMUA_Achr6P25400_001	Banana	nucleus	44.62	43.37
OQU83031	Sorghum	cytosol, mitochondrion, nucleus, plastid	43.96	43.17
Os11t0183700-01	Rice	mitochondrion	44.09	42.86
Zm00001d000110_P003	Maize	mitochondrion	43.7	42.47
EES15751	Sorghum	nucleus	42.65	41.99
Zm00001d041847_P002	Maize	nucleus	42.39	41.79
TraesCS5D01G128700.1	Wheat	nucleus	42.65	41.3
TraesCS5B01G119800.1	Wheat	nucleus	42.78	41.11
TraesCS5A01G113500.1	Wheat	nucleus	42.65	41.09
HORVU4Hr1G017950.27	Barley	nucleus	28.22	40.41
TraesCS4B01G097500.1	Wheat	cytosol, mitochondrion, nucleus	25.85	40.37
TraesCS4D01G093900.2	Wheat	cytosol, nucleus, plastid	40.81	40.18
TraesCS4A01G218700.1	Wheat	cytosol, nucleus, plastid	22.57	39.45
HORVU5Hr1G037060.1	Barley	nucleus, plastid	42.78	39.37
TraesCS4B01G097600.1	Wheat	nucleus	11.42	38.16
Os12t0176700-00	Rice	nucleus	40.55	36.27
CDY23721	Canola	plastid	14.57	24.18
CDY37705	Canola	plastid	14.04	23.31
CDX83324	Canola	nucleus	14.96	23.17
CDX95728	Canola	nucleus	14.57	22.29
CDX80122	Canola	nucleus	14.17	21.09
CDY66036	Canola	nucleus	13.91	20.42
CDX75433	Canola	nucleus	21.78	17.75
CDY46250	Canola	nucleus	21.13	17.0
CDX76281	Canola	nucleus	21.13	16.7

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	MapMan:12.4.2.1	GO:A0A078J403	UniProt:A0A078J403	EnsemblPlants:CDY58587
ProteinID:CDY58587	ProteinID:CDY58587.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
EnsemblPlantsGene:GSBRNA2T00024869001	InterPro:Homeobox-like_sf	InterPro:IPR007526	InterPro:IPR017884	InterPro:IPR036388	PFAM:PF00249
PFAM:PF04433	PFAM:PF16495	PFscan:PS50934	PFscan:PS51293	PANTHER:PTHR12802	PANTHER:PTHR12802:SF61
InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00717	InterPro:SMARCC_C	SUPFAM:SSF46689	InterPro:SWIRM
UniParc:UPI0004EE5307	InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:	:

Description

BnaC08g48430DBnaC08g48430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J403]

Coordinates

chrLK033681:-:11284..15004

Molecular Weight (calculated)

83089.1 Da

IEP (calculated)

4.892

GRAVY (calculated)

-0.479

Length

762 amino acids

Sequence
(BLAST)

001: MEEEDEDNNN NEEMEDADNN ADELHQNGGA APDPGRGTSE VVEDSGERIS GFPSVVRRVV IRPHAYVTAV VAAERGCLMG EIKGQGLLLP SLENISYGQL
101: QALSSVPADS LLLDPERSDG VSSGCVISPP SIMEGEGVVK RFGDKVHVLP MHSADWFAPN TVDRLERQVL PQYFCGKSPN HTPESYMRFR NAVVSKYMDN
201: PEKALTISDC QGLVNGVDTE DLARVFRFLD HWGIINYCAA PQCHPGPSRD VSDVREDANG EVHVPSAALT SIDSLIRFDK PICRHKADEV SSSLPCSDVD
301: LPDLDIRIRE HLCENHCNHC SRPLPTVYFQ SQKKEDVLLC SDCFHNARFV VGHSCIDFVR VDKSKDYRDQ DGENWSDQET LLLLEAVELY NENWVQIADH
401: VGSKSKAQCI LHFLRLPVED GLLDNVELPG VTDPANPTNG YDHRGRDSNG ALPGSSEQDS DTEINLPFVK SPNPVMALVA FLASAVGPRV AASCAHECLT
501: VLSADYRLES NGLQGKEPSL QHQDDNSGTQ KTSCQNGAEA PTPLPQDKVM AAFRAGLSAA STKAKLFADH EEREIQRLSA NIVNHQLKRM ELKLKQFAEI
601: ETLLMKECEQ VEKTRQRFAA ERARMLSSRY GSAGGITPQA NSGGNNINTL LQQQLQQQQV SAGSSQPSMI PGFSNNPQVH AQMQFMARQQ QQQQAFSFGP
701: RLPLNAIQTS AGSTASPNVM FGNNQLNNPA GGAAASINQS SFSNPMVRSS TGSGSGSGLG LN

Best Arabidopsis Sequence Match ( AT1G21700.1 )
(BLAST)

001: MPASEDRRGK WKRKKRGGLS AARKPKQEEE DMEEEDEENN NNNNEEMDDV ENADELQQNG GATPDPGLGI GEVVEDSGSR ISDFPAVVKR VVIRPHASVM
101: AVVAAERAGL IGETRGQGSL PALENISFGQ LQALSTVPAD SLDLERSDGS SSAYVISPPP IMDGEGVVKR FGDLVHVLPM HSDWFAPNTV DRLERQVVPQ
201: FFSGKSPNHT PESYMEFRNA IVSKYVENPE KTLTISDCQG LVDGVDIEDF ARVFRFLDHW GIINYCATAQ SHPGPLRDVS DVREDTNGEV NVPSAALTSI
301: DSLIKFDKPN CRHKGGEVYS SLPSLDGDSP DLDIRIREHL CDSHCNHCSR PLPTVYFQSQ KKGDILLCCD CFHHGRFVVG HSCLDFVRVD PMKFYGDQDG
401: DNWTDQETLL LLEAVELYNE NWVQIADHVG SKSKAQCILH FLRLPVEDGL LDNVEVSGVT NTENPTNGYD HKGTDSNGDL PGYSEQGSDT EIKLPFVKSP
501: NPVMALVAFL ASAVGPRVAA SCAHESLSVL SEDDRMKSEG MQGKEASLLD GENQQQDGAH KTSSQNGAEA QTPLPQDKVM AAFRAGLSAA ATKAKLFADH
601: EEREIQRLSA NIVNHQLKRM ELKLKQFAEI ETLLMKECEQ VEKTRQRFSA ERARMLSARF GSPGGISPQT NNLQGMSLST GGNNINSLMH QQHQQQQASA
701: TSQPSIIPGF SNNPQVQAQM HFMARQQQQQ QQQQQQQQQA FSFGPRLPLN AIQTNAGSTA SPNVMFGNNQ LNNPAAAGAA SINQPSFSHP MVRSSTGSGS
801: GSGLGLN

Arabidopsis Description

SWI3CSWI/SNF complex subunit SWI3C [Source:UniProtKB/Swiss-Prot;Acc:Q9XI07]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.