CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72943
CDX89368
CDX92752
CDX94382
CDX96432
CDX96578
CDY01017
CDY04665
CDY08183
CDY08530
CDY14318
CDY23721
CDY37705
CDY38260
CDY42756
CDY50002
CDY50003
CDY54381
CDY58587
CDY67227
CDY67257

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33610.1	CDX96578	AT1G21700.1	12140326
AT2G33610.1	CDY04665	AT1G21700.1	12140326
AT2G33610.1	CDY08183	AT1G21700.1	12140326
AT2G33610.1	CDY58587	AT1G21700.1	12140326
AT2G33610.1	CDX96578	AT1G21700.1	16845477
AT2G33610.1	CDY04665	AT1G21700.1	16845477
AT2G33610.1	CDY08183	AT1G21700.1	16845477
AT2G33610.1	CDY58587	AT1G21700.1	16845477
AT2G33610.1	CDX72943	AT1G72770.1	19033529
AT2G33610.1	CDX96432	AT1G72770.1	19033529
AT2G33610.1	CDY23721	AT2G33610.1	12140326
AT2G33610.1	CDY37705	AT2G33610.1	12140326
AT2G33610.1	CDY23721	AT2G33610.1	16845477
AT2G33610.1	CDY37705	AT2G33610.1	16845477
AT2G33610.1	CDY01017	AT3G11410.1	19033529
AT2G33610.1	CDY08530	AT3G11410.1	19033529
AT2G33610.1	CDY67227	AT3G11410.1	19033529
AT2G33610.1	CDY67257	AT3G11410.1	19033529
AT2G33610.1	CDX89368	AT4G26080.1	19033529
AT2G33610.1	CDX92752	AT4G26080.1	19033529
AT2G33610.1	CDX94382	AT4G26080.1	19033529
AT2G33610.1	CDY14318	AT4G26080.1	19033529
AT2G33610.1	CDY42756	AT4G26080.1	19033529
AT2G33610.1	CDY50002	AT4G26080.1	19033529
AT2G33610.1	CDY50003	AT4G26080.1	19033529
AT2G33610.1	CDY38260	AT5G57050.1	19033529
AT2G33610.1	CDY54381	AT5G57050.1	19033529

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021864.1-P	Field mustard	plastid	97.17	97.17
CDY37705	Canola	plastid	88.45	88.45
AT2G33610.1	Thale cress	nucleus	69.93	68.44
VIT_18s0122g00670.t01	Wine grape	nucleus, plastid	49.89	46.54
KRH60872	Soybean	nucleus	47.71	45.25
KRH51554	Soybean	nucleus	47.93	44.81
Solyc04g082760.2.1	Tomato	nucleus	45.32	42.54
PGSC0003DMT400025895	Potato	nucleus	45.97	42.28
GSMUA_AchrUn_...	Banana	plastid	43.14	40.08
EES04686	Sorghum	plastid	39.43	36.35
Os02t0194000-01	Rice	nucleus	31.59	35.89
Zm00001d053687_P001	Maize	plastid	39.0	35.73
HORVU6Hr1G034070.2	Barley	plastid	38.56	35.61
TraesCS6D01G156700.3	Wheat	plastid	38.56	35.61
TraesCS6A01G167800.1	Wheat	plastid	38.13	35.0
TraesCS6B01G195400.1	Wheat	plastid	37.04	34.48
CDX83324	Canola	nucleus	25.27	23.58
CDX95728	Canola	nucleus	25.49	23.49
CDX80122	Canola	nucleus	24.4	21.88
CDY66036	Canola	nucleus	24.4	21.58
CDY58587	Canola	cytosol, endoplasmic reticulum, nucleus	24.18	14.57
CDY04665	Canola	cytosol, nucleus, vacuole	23.09	14.23
CDY08183	Canola	cytosol, nucleus, vacuole	22.66	13.94
CDX96578	Canola	nucleus	23.31	13.48
CDX75433	Canola	nucleus	23.53	11.55
CDX76281	Canola	nucleus	23.97	11.41
CDY46250	Canola	nucleus	23.31	11.3

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	MapMan:12.4.2.1	GO:A0A078GEC7	UniProt:A0A078GEC7	EnsemblPlants:CDY23721
ProteinID:CDY23721	ProteinID:CDY23721.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
EnsemblPlantsGene:GSBRNA2T00024044001	InterPro:Homeobox-like_sf	InterPro:IPR007526	InterPro:IPR017884	InterPro:IPR036388	PFAM:PF00249
PFAM:PF04433	PFAM:PF16495	PFscan:PS50934	PFscan:PS51293	PANTHER:PTHR12802	PANTHER:PTHR12802:SF44
InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00717	InterPro:SMARCC_C	SUPFAM:SSF46689	InterPro:SWIRM
UniParc:UPI0004EF4CC2	InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:	:

Description

BnaC04g44010DBnaC04g44010D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GEC7]

Coordinates

chrLK032148:-:20578..23013

Molecular Weight (calculated)

51218.1 Da

IEP (calculated)

5.344

GRAVY (calculated)

-0.578

Length

459 amino acids

Sequence
(BLAST)

001: MATNAPIPGG SGEIPPITPS RPIIPEAPSE ISASSNSLQP PPSSSDTYRI YIPSYSRWFS WNEINECEVR SLPELFDSRS SSKNPRVYLY LRNSIIKQYR
101: DEHPNKISFT DVRRTLVGDV VSIRRVFDFL DSWGLINYSS SASAKPLKWD DKEAVASEPP STVKESAKRI CNGCKSVCSV ACFASEKYEL TLCARCYVRG
201: NYRVGINSSE FKRVELSEES KTGWSEKETL LLLEAVMHYG DDWKKVASHV TGRTEKDCVS QFVKLPFGEQ FAKDSDSEDA LETFNQIKGS ADPESEGRVK
301: DGSSSPDNKR MKLTPLADAS NPIMAQAAFL SALAGTKVAE AAARAAVTAL SDIDHEAGKN AGGDPNGQEI NGNNSERAVA EAKSLLEKEE KEVEGAIREI
401: VEVEMMKIRD RIVHFEKLDL EMERSRKQLE EMKNLLFTDQ LNIFFHTRRS RKAEDRAEC

Best Arabidopsis Sequence Match ( AT2G33610.1 )
(BLAST)

001: MAMKAPDPGG SGEILPSTPS LSETTSGGAA AASKSAQLPS SSSDIDNIHV PSYSSWFSWT DINDCEVRSL PEFFDSRSSS KNPKFYLYLR NSIIKQYRDD
101: HPRKISFTDV RRTLVSDVVS IRRVFDFLDS WGLINYNSSA SAKPLKWEEK EAGKSAGDAA SEPATTVKET AKRNCNGCKA ICSIACFACD KYDLTLCARC
201: YVRSNYRVGI NSSEFKRVEI SEESKPEWSD KEILLLLEAV MHYGDDWKKV ASHVIGRTEK DCVSQFVKLP FGEQFVKESD SEDGLEMFDQ IKDSDIPESE
301: GIDKDGSSPN KRIKLTPLAD ASNPIMAQAA FLSALAGTNV AEAAARAAVR ALSDVDYEAD KNASRDPNRQ DANAASSGET TRNESERAWA DAKSLIEKEE
401: HEVEGAIKET VEVEMKKIRD RIVHFEKLDL EMERSRKQLE EVRNLLFVDQ LNIFFHTRKA RKTEDRIEC

Arabidopsis Description

SWI3BSWI/SNF complex subunit SWI3B [Source:UniProtKB/Swiss-Prot;Acc:Q84JG2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.