Factsheet for Bra021864.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
cytosol 1
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002038.1-P
Bra002766.1-P
Bra010441.1-P
Bra013945.1-P
Bra016034.1-P
Bra016409.1-P
Bra017943.1-P
Bra019121.1-P
Bra021864.1-P
Bra034845.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33610.1	Bra016409.1-P	AT1G21700.1	12140326
AT2G33610.1	Bra017943.1-P	AT1G21700.1	12140326
AT2G33610.1	Bra016409.1-P	AT1G21700.1	16845477
AT2G33610.1	Bra017943.1-P	AT1G21700.1	16845477
AT2G33610.1	Bra016034.1-P	AT1G72770.1	19033529
AT2G33610.1	Bra021864.1-P	AT2G33610.1	12140326
AT2G33610.1	Bra021864.1-P	AT2G33610.1	16845477
AT2G33610.1	Bra002038.1-P	AT3G11410.1	19033529
AT2G33610.1	Bra034845.1-P	AT3G11410.1	19033529
AT2G33610.1	Bra010441.1-P	AT4G26080.1	19033529
AT2G33610.1	Bra013945.1-P	AT4G26080.1	19033529
AT2G33610.1	Bra019121.1-P	AT4G26080.1	19033529
AT2G33610.1	Bra002766.1-P	AT5G57050.1	19033529

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY23721	Canola	plastid	97.17	97.17
CDY37705	Canola	plastid	90.63	90.63
AT2G33610.1	Thale cress	nucleus	69.93	68.44
VIT_18s0122g00670.t01	Wine grape	nucleus, plastid	49.46	46.14
KRH60872	Soybean	nucleus	47.28	44.83
KRH51554	Soybean	nucleus	47.49	44.4
Solyc04g082760.2.1	Tomato	nucleus	45.75	42.94
PGSC0003DMT400025895	Potato	nucleus	46.19	42.48
GSMUA_AchrUn_...	Banana	plastid	42.7	39.68
EES04686	Sorghum	plastid	39.22	36.14
Zm00001d053687_P001	Maize	plastid	38.78	35.53
HORVU6Hr1G034070.2	Barley	plastid	38.34	35.41
TraesCS6D01G156700.3	Wheat	plastid	38.34	35.41
Os02t0194000-01	Rice	nucleus	30.94	35.15
TraesCS6A01G167800.1	Wheat	plastid	37.91	34.8
TraesCS6B01G195400.1	Wheat	plastid	36.82	34.28
Bra004441.1-P	Field mustard	nucleus	25.05	22.37
Bra017943.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	20.26	15.07
Bra016409.1-P	Field mustard	nucleus	22.88	13.24
Bra011533.1-P	Field mustard	nucleus	23.53	11.59

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	MapMan:12.4.2.1	EnsemblPlantsGene:Bra021864	EnsemblPlants:Bra021864.1	EnsemblPlants:Bra021864.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Homeobox-like_sf	InterPro:IPR007526
InterPro:IPR017884	InterPro:IPR036388	UniProt:M4DZB7	PFAM:PF00249	PFAM:PF04433	PFAM:PF16495
PFscan:PS50934	PFscan:PS51293	PANTHER:PTHR12802	PANTHER:PTHR12802:SF44	InterPro:SANT/Myb	InterPro:SANT_dom
SMART:SM00717	InterPro:SMARCC_C	SUPFAM:SSF46689	InterPro:SWIRM	UniParc:UPI00025436DF	InterPro:WH-like_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

AT2G33610 (E=5e-189) ATSWI3B, CHB2 | ATSWI3B (SWITCH SUBUNIT 3); DNA binding

Coordinates

chrA04:+:14928016..14930353

Molecular Weight (calculated)

51291.0 Da

IEP (calculated)

5.150

GRAVY (calculated)

-0.599

Length

459 amino acids

Sequence
(BLAST)

001: MATNAPIPGG SSEIPPVTPS RPIIPETPSE ISASSNSLQP PPSSSDTDRI YIPSYSRWFS WNEINECEVR SLPEFFDSRS SSKNPRVYLY LRNSIIKQYR
101: DEHPNKINFT DVRRTLVGDV VSIRRVFDFV DSWGLINYSS SASAKPLKWD DKEAVASEPP STVKESAKRI CNGCKSVCSV ACFASEKYEL TLCARCYVRG
201: NYRVGINSSE FKRVELSEES KTGWSEKETL LLLEAVMHYG DDWKKVASHV TGRTEKDCVS QFVKLPFGEQ FAKDSDSEDA LETFDQIKGS ADHESEGRVK
301: DGSSSPDNKR MKLTPLADAS NPIMAQAAFL SALAGTKVAE AAARAAVTAL SDIDHEAGKN AGGDPNGQEI NGNDSERAVA EAKSLIEKEE KEVEGAIREI
401: VEVEMMKIRD RIVHFEKLDL EMERSRKQLE DMKNLLFTDQ LNIFFHTRRS RKAEDRAEC

Best Arabidopsis Sequence Match ( AT2G33610.1 )
(BLAST)

001: MAMKAPDPGG SGEILPSTPS LSETTSGGAA AASKSAQLPS SSSDIDNIHV PSYSSWFSWT DINDCEVRSL PEFFDSRSSS KNPKFYLYLR NSIIKQYRDD
101: HPRKISFTDV RRTLVSDVVS IRRVFDFLDS WGLINYNSSA SAKPLKWEEK EAGKSAGDAA SEPATTVKET AKRNCNGCKA ICSIACFACD KYDLTLCARC
201: YVRSNYRVGI NSSEFKRVEI SEESKPEWSD KEILLLLEAV MHYGDDWKKV ASHVIGRTEK DCVSQFVKLP FGEQFVKESD SEDGLEMFDQ IKDSDIPESE
301: GIDKDGSSPN KRIKLTPLAD ASNPIMAQAA FLSALAGTNV AEAAARAAVR ALSDVDYEAD KNASRDPNRQ DANAASSGET TRNESERAWA DAKSLIEKEE
401: HEVEGAIKET VEVEMKKIRD RIVHFEKLDL EMERSRKQLE EVRNLLFVDQ LNIFFHTRKA RKTEDRIEC

Arabidopsis Description

SWI3BSWI/SNF complex subunit SWI3B [Source:UniProtKB/Swiss-Prot;Acc:Q84JG2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.