Factsheet for PGSC0003DMT400025895

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006608
PGSC0003DMT400025895
PGSC0003DMT400043146
PGSC0003DMT400046382
PGSC0003DMT400069947

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33610.1	PGSC0003DMT400006608	AT1G72770.1	19033529
AT2G33610.1	PGSC0003DMT400025895	AT2G33610.1	12140326
AT2G33610.1	PGSC0003DMT400025895	AT2G33610.1	16845477
AT2G33610.1	PGSC0003DMT400043146	AT3G11410.1	19033529
AT2G33610.1	PGSC0003DMT400069947	AT3G11410.1	19033529
AT2G33610.1	PGSC0003DMT400046382	AT4G26080.1	19033529
AT2G33610.1	PGSC0003DMT400046382	AT5G57050.1	19033529

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g082760.2.1	Tomato	nucleus	81.36	83.03
VIT_18s0122g00670.t01	Wine grape	nucleus, plastid	47.29	47.97
Bra021864.1-P	Field mustard	plastid	42.48	46.19
KRH51554	Soybean	nucleus	45.29	46.03
CDY23721	Canola	plastid	42.28	45.97
KRH60872	Soybean	nucleus	44.49	45.87
CDY37705	Canola	plastid	42.08	45.75
AT2G33610.1	Thale cress	nucleus	41.48	44.14
GSMUA_AchrUn_...	Banana	plastid	39.88	40.28
Zm00001d053687_P001	Maize	plastid	37.68	37.52
EES04686	Sorghum	plastid	37.07	37.15
TraesCS6A01G167800.1	Wheat	plastid	35.87	35.8
HORVU6Hr1G034070.2	Barley	plastid	35.27	35.41
TraesCS6B01G195400.1	Wheat	plastid	34.87	35.29
TraesCS6D01G156700.3	Wheat	plastid	34.67	34.81
Os02t0194000-01	Rice	nucleus	27.86	34.41
PGSC0003DMT400001865	Potato	nucleus	20.64	10.9

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	EntrezGene:102584029	MapMan:12.4.2.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	InterPro:Homeobox-like_sf	InterPro:IPR007526	InterPro:IPR017884	InterPro:IPR036388	UniProt:M1AMA7
PFAM:PF00249	PFAM:PF04433	EnsemblPlantsGene:PGSC0003DMG400009998	PGSC:PGSC0003DMG400009998	EnsemblPlants:PGSC0003DMT400025895	PFscan:PS50934
PFscan:PS51293	PANTHER:PTHR12802	PANTHER:PTHR12802:SF44	InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00717
SUPFAM:SSF46689	InterPro:SWIRM	UniParc:UPI000295A26A	InterPro:WH-like_DNA-bd_sf	RefSeq:XP_006342179.1	SEG:seg

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400009998]

Coordinates

chr4:-:71932042..71936358

Molecular Weight (calculated)

56031.9 Da

IEP (calculated)

5.159

GRAVY (calculated)

-0.606

Length

499 amino acids

Sequence
(BLAST)

001: MPESGEIKSP AAKSDPQTTS PPPSQTPSQP QTQPQQPQTA VLPLKRPQQL ESSPNPTTPS VTDPKDVTPT TISSRITEPD FIYIPSYSRW FSWNSIHECE
101: VRFLPEFFDG RSPSKNPKTY KYYRNTIIRR FRDNPTKKIT FTEARKTIVG DVGSIRRVFD FSETWGLINY TANSSKSLIK WEEKESKSTS ASAPQNADAN
201: GTSTDFTLPK KRICNLCKTV CRIACFASDK YDLTLCARCY VSNDNRVGVN NSELRRVEIS EEVKTDWTDK ETLHLLEALM HYGDDWKKVA EHVGGRSTKE
301: CVARFVKLPF GEQFMGPPES AEVDSESRSE TMYLQSKRRR LTPFADTSNP IIAQAAFLSA LAGKEVTELA AHAAVTALSE IDEGITTGSP ASLLCGAERQ
401: ESDGKDKLER PLVEAMVQFE KEALDLERAV SDVAIETKEI EDSIAHFEER DLQMEKEWQQ LIQLKNLIFI DQLTLLVNKS GAPKAGETIR EEVIDVKTE

Best Arabidopsis Sequence Match ( AT2G33610.1 )
(BLAST)

001: MAMKAPDPGG SGEILPSTPS LSETTSGGAA AASKSAQLPS SSSDIDNIHV PSYSSWFSWT DINDCEVRSL PEFFDSRSSS KNPKFYLYLR NSIIKQYRDD
101: HPRKISFTDV RRTLVSDVVS IRRVFDFLDS WGLINYNSSA SAKPLKWEEK EAGKSAGDAA SEPATTVKET AKRNCNGCKA ICSIACFACD KYDLTLCARC
201: YVRSNYRVGI NSSEFKRVEI SEESKPEWSD KEILLLLEAV MHYGDDWKKV ASHVIGRTEK DCVSQFVKLP FGEQFVKESD SEDGLEMFDQ IKDSDIPESE
301: GIDKDGSSPN KRIKLTPLAD ASNPIMAQAA FLSALAGTNV AEAAARAAVR ALSDVDYEAD KNASRDPNRQ DANAASSGET TRNESERAWA DAKSLIEKEE
401: HEVEGAIKET VEVEMKKIRD RIVHFEKLDL EMERSRKQLE EVRNLLFVDQ LNIFFHTRKA RKTEDRIEC

Arabidopsis Description

SWI3BSWI/SNF complex subunit SWI3B [Source:UniProtKB/Swiss-Prot;Acc:Q84JG2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.