Factsheet for PGSC0003DMT400001865

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g109510.2.1	Tomato	nucleus	84.13	84.13
VIT_03s0063g02410.t01	Wine grape	nucleus	42.22	39.0
AT4G34430.4	Thale cress	nucleus	38.52	36.92
Bra011533.1-P	Field mustard	nucleus	34.39	34.87
CDX75433	Canola	nucleus	34.29	34.65
KRH24488	Soybean	nucleus	37.25	34.65
GSMUA_Achr7P26780_001	Banana	nucleus	33.12	34.17
CDY46250	Canola	nucleus	34.07	34.0
GSMUA_Achr3P30500_001	Banana	nucleus	34.07	33.97
KRH29482	Soybean	nucleus	37.25	33.62
CDX76281	Canola	nucleus	34.29	33.61
Zm00001d033825_P001	Maize	nucleus	29.21	30.56
Zm00001d013391_P006	Maize	nucleus	28.89	29.9
EER93546	Sorghum	nucleus	28.36	29.48
Os04t0110300-02	Rice	plasma membrane	27.2	29.01
TraesCS4D01G053300.2	Wheat	nucleus	28.25	28.99
TraesCS4A01G261600.1	Wheat	nucleus	28.25	28.8
EES10369	Sorghum	nucleus	27.3	28.57
HORVU4Hr1G008820.1	Barley	nucleus	28.47	28.23
TraesCS4B01G053000.2	Wheat	nucleus	28.36	28.21
Zm00001d004521_P001	Maize	nucleus, plastid	23.7	26.7
PGSC0003DMT400025895	Potato	nucleus	10.9	20.64
Os03t0722100-01	Rice	cytosol, nucleus	9.63	17.01

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	EntrezGene:102582052	MapMan:12.4.2.1	Gene3D:3.30.60.90	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	GO:GO:0046872	InterPro:Homeobox-like_sf
InterPro:IPR000433	InterPro:IPR007526	InterPro:IPR017884	InterPro:IPR036388	UniProt:M0ZJ74	PFAM:PF00249
PFAM:PF00569	PFAM:PF04433	PFAM:PF16495	EnsemblPlantsGene:PGSC0003DMG400000702	PGSC:PGSC0003DMG400000702	EnsemblPlants:PGSC0003DMT400001865
ScanProsite:PS01357	PFscan:PS50135	PFscan:PS50934	PFscan:PS51293	PANTHER:PTHR12802	PANTHER:PTHR12802:SF39
InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00291	SMART:SM00717	InterPro:SMARCC_C	SUPFAM:SSF46689
SUPFAM:SSF57850	InterPro:SWIRM	UniParc:UPI000295B911	InterPro:WH-like_DNA-bd_sf	RefSeq:XP_006365090.1	InterPro:Znf_ZZ
SEG:seg	:	:	:	:	:

Description

Transcription regulatory protein SWI3 [Source:PGSC_GENE;Acc:PGSC0003DMG400000702]

Coordinates

chr1:+:85833800..85843555

Molecular Weight (calculated)

103011.0 Da

IEP (calculated)

4.411

GRAVY (calculated)

-0.684

Length

945 amino acids

Sequence
(BLAST)

001: MEEKRKDAGT PPPAADTPMT SADVPSAEAP TSRRRGGGHK RKASAIGSGA SSTPPSTLSK RQKQSAVPFP PIHNGPLTRA RQQPNNAAAA AASAVSPSGF
101: GVRIESEVLP KAEVGVEEAV KVDKESNQVK EDLEALEAEI EAEIESIRSR DRNVHVVPTH AGWFSWTEVH PLEKQTMPSF FNEKLQSRTP EIYMEIRNWI
201: MKKYHTDPNI QIELNDLSEL SAGDLDVKKE VMEFLDYWGL INYHPFPQTS SVVNVDIDGD EAAKTDSLVD KLFRFESDET WTPVLPRSSV ATPSASSGFF
301: PESAIAEELM KSEGPAVEYH CNSCSADCSR KRYHCQKEAD FDLCSECFNN GKFGSGMSPS DFIVMEPGES GGASGGKWTD QETLLLLEAL ELYKENWNEI
401: AEHVATKTKA QCILHFIEMP IEDTFLDTDA ENNQCVKEKE DADLSKDDTS ASIDAPETAE SKDDGNDNQV SPTVETSKPE NVNGPIPQEE VGENCALNAL
501: REAFTAAGFY PPPGECASFA EAGNPVMAVA AFLVKLVEAK RVTASVRSSL KSISGNPSGE NLALRHCFVL EDPPDDGKTS SDTDRPANGS VDPEDKKDED
601: DNVEMQKEEK LTSVIEEKSS SIGQEETKGE TNIDKKCEEQ DGENHGEKNE KELEEAAHLV STSDENPEKS DTSKQSDPIP TEKEGEPASL KESDDAGLAV
701: GQTPSTTAES DVLTSKLELP PGFEKESVDG ALTAIPSDSP DTPKDEDMMP AVQTKEPEQS MKSNSVLENG ENTGAGEVKD SVDGRKDPLK TKNDLDIDKI
801: KCAAVTALTA AAVKAKYLAD QEEDQIRLLT TSLIEKQLNK LESKITFFHD MDNVVMRVRE LLERSKQRLL LERSQILKSR SVTHPVPQSV PANRPGMVFA
901: NTAPRLLNAM SSQRIPYSRP IMAGTPTPSS FMPTTVSGNS MQPSK

Best Arabidopsis Sequence Match ( AT4G34430.2 )
(BLAST)

001: MEEKRRDSAG TLAFAGSSGD SPASEPMPAP RRRGGGLKRK ANALGGSNFF SSAPSKRMLT REKAMLASFS PVHNGPLTRA RQAPSIMPSA ADGVKSEVLN
101: VAVGADGEKP KEEEERNKAI REWEALEAKI EADFEAIRSR DSNVHVVPNH CGWFSWEKIH PLEERSLPSF FNGKLEGRTS EVYREIRNWI MGKFHSNPNI
201: QIELKDLTEL EVGDSEAKQE VMEFLDYWGL INFHPFPPTD TGSTASDHDD LGDKESLLNS LYRFQVDEAC PPLVHKPRFT AQATPSGLFP DPMAADELLK
301: QEGPAVEYHC NSCSADCSRK RYHCPKQADF DLCTECFNSG KFSSDMSSSD FILMEPAEAP GVGSGKWTDQ ETLLLLEALE IFKENWNEIA EHVATKTKAQ
401: CMLHFLQMPI EDAFLDQIDY KDPISKDTTD LAVSKDDNSV LKDAPEEAEN KKRVDEDETM KEVPEPEDGN EEKVSQESSK PGDASEETNE MEAEQKTPKL
501: ETAIEERCKD EADENIALKA LTEAFEDVGH SSTPEASFSF ADLGNPVMGL AAFLVRLAGS DVATASARAS IKSLHSNSGM LLATRHCYIL EDPPDNKKDP
601: TKSKSCSADA EGNDDNSHKD DQPEEKSKKA EEVSLNSDDR EMPDTDTGKE TQDSVSEEKQ PGSRTENSTT KLDAVQEKRS SKPVTTDNSE KPVDIICPSQ
701: DKCSGKELQE PLKDGNKLSS ENKDASQSTV SQSAADASQP EASRDVEMKD TLQSEKDPED VVKTVGEKVQ LAKEEGANDV LSTPDKSVSQ QPIGSASAPE
801: NGTAGGNPNI EGKKEKDICE GTKDKYNIEK LKRAAISAIS AAAVKAKNLA KQEEDQIRQL SGSLIEKQLH KLEAKLSIFN EAESLTMRVR EQLERSRQRL
901: YHERAQIIAA RLGVPPSMSS KASLPTNRIA ANFANVAQRP PMGMAFPRPP MPRPPGFPVP GSFVAATTMT GSSDPSPGSD NVSSV

Arabidopsis Description

CHB3DNA-binding family protein [Source:TAIR;Acc:AT4G34430]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.