CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011533.1-P	Field mustard	nucleus	97.01	97.32
CDX76281	Canola	nucleus	53.69	52.07
CDY46250	Canola	nucleus	52.73	52.06
AT4G34430.4	Thale cress	nucleus	51.23	48.58
PGSC0003DMT400001865	Potato	nucleus	34.65	34.29
KRH24488	Soybean	nucleus	36.68	33.76
VIT_03s0063g02410.t01	Wine grape	nucleus	36.58	33.43
Solyc01g109510.2.1	Tomato	nucleus	33.48	33.12
GSMUA_Achr7P26780_001	Banana	nucleus	32.3	32.97
KRH29482	Soybean	nucleus	35.72	31.9
GSMUA_Achr3P30500_001	Banana	nucleus	31.44	31.01
EER93546	Sorghum	nucleus	29.2	30.03
Zm00001d013391_P006	Maize	nucleus	29.09	29.79
Zm00001d033825_P001	Maize	nucleus	28.56	29.57
TraesCS4D01G053300.2	Wheat	nucleus	28.98	29.42
TraesCS4A01G261600.1	Wheat	nucleus	28.98	29.23
Os04t0110300-02	Rice	plasma membrane	27.17	28.67
HORVU4Hr1G008820.1	Barley	nucleus	29.2	28.65
TraesCS4B01G053000.2	Wheat	nucleus	28.98	28.53
EES10369	Sorghum	nucleus	26.63	27.57
Zm00001d004521_P001	Maize	nucleus, plastid	22.35	24.91
CDY23721	Canola	plastid	11.55	23.53
CDY37705	Canola	plastid	11.23	22.88
CDX83324	Canola	nucleus	11.76	22.36
CDX95728	Canola	nucleus	11.76	22.09
CDY58587	Canola	cytosol, endoplasmic reticulum, nucleus	17.75	21.78
CDY04665	Canola	cytosol, nucleus, vacuole	17.22	21.61
CDY08183	Canola	cytosol, nucleus, vacuole	17.11	21.45
CDX80122	Canola	nucleus	11.55	21.09
CDX96578	Canola	nucleus	17.54	20.65
CDY66036	Canola	nucleus	11.44	20.62
Os03t0722100-01	Rice	cytosol, nucleus	9.41	16.45

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	MapMan:12.4.2.1	Gene3D:3.30.60.90	GO:A0A078CK26	EnsemblPlants:CDX75433
ProteinID:CDX75433	ProteinID:CDX75433.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0008270	EnsemblPlantsGene:GSBRNA2T00121323001	InterPro:Homeobox-like_sf	InterPro:IPR000433	InterPro:IPR007526
InterPro:IPR017884	InterPro:IPR036388	PFAM:PF00249	PFAM:PF00569	PFAM:PF04433	PFAM:PF16495
ScanProsite:PS01357	PFscan:PS50135	PFscan:PS50934	PFscan:PS51293	PANTHER:PTHR12802	PANTHER:PTHR12802:SF39
InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00291	SMART:SM00717	InterPro:SMARCC_C	SUPFAM:SSF46689
SUPFAM:SSF57850	InterPro:SWIRM	UniParc:UPI0004EED826	InterPro:WH-like_DNA-bd_sf	InterPro:Znf_ZZ	SEG:seg

Description

BnaA01g02690D

Coordinates

chrLK031804:+:1076769..1080582

Molecular Weight (calculated)

101955.0 Da

IEP (calculated)

4.770

GRAVY (calculated)

-0.751

Length

935 amino acids

Sequence
(BLAST)

001: MEERRRDAGG TLASAGSSGD SPASEPTPRR RVKRKSNALG TSNSSSTSSK RMLTREKAML ASFSPVHNGP LTRARQAPSN MPSAAEAKPE LLNAPDGEKP
101: KEEEERNKAI REWEALEAKI EADFEGIRSR GSNVHVVPNH CGWFSWGKIH PLEERSLHSF FNGKLEGRSS DVYIDIRDWI VRKFHSDPNT QIEAKHLTEL
201: EVGDVEAKQE VMEFLDYWGL INFHPFPPPD ASSSDGGERD DGVGDKESLL NSLYRFQADE ASSMAAFVQK PRLTAQATTT PSGLFPDPMA AADDSLKQEG
301: PAVEYHCNSC SADCSLKRYH CPKQADFDLC MECFDSGKFS SDMSSSDFIL LEPAKDPGVG SGKWTDQETL LLLEGIEIFK ENWSEIAEHV ATKTKAQCML
401: HFLQMPIEDA FLDQTDHKDP SIKDTTDIAV SKDEKPVLND APVEKEKETE NTNLVVEVEA VKEAPEKEDD NEGKVPQESS KPGDASEETK EVEADQKTPE
501: VEIVIDERCK DEADENVALK ALTEAFEDVG YPITPEASLS FADLGNPVMG LAAFLVRLAG SDVATASARA SVKSLNSNSG LLLATRHCFV LEDPPENKED
601: LTESKSVDAE EKSQKAEDDR EMTDSDPGKV NQDSVSEGKQ PGSLTESYAR NPDSEGQKVS INAAATKNSE KPADIICKLQ DKSSGKELEK PSKDGDKLSS
701: ENKAASKATV SKAAADVSQP EASKDVEMKD TLQSEKDPQD MVKTAGEKAE QAKEDDHSMP DTSVAEQPIG SASLPENGTG GCENLNKEGS KEKNVCAGKK
801: DKHNSGKLKR AAISALSAAA VKAKHLAKLE EDQIRQLSGS LIEKQQLHKL EAKLSIFNDA ESLTARVREQ LERSRQRLYH ERAQIIAARL GVPPSVSSKA
901: SLPANRIATN FANVAHRPPI GMAFPRPPMP RPPGP

Best Arabidopsis Sequence Match ( AT4G34430.4 )
(BLAST)

001: MEEKRRDSAG TLAFAGSSGD SPASEPMPAP RRRGGGLKRK ANALGGSNFF SSAPSKRMLT REKAMLASFS PVHNGPLTRA RQAPSIMPSA ADGVKSEVLN
101: VAVGADGEKP KEEEERNKAI REWEALEAKI EADFEAIRSR DSNVHVVPNH CGWFSWEKIH PLEERSLPSF FNGKLEGRTS EVYREIRNWI MGKFHSNPNI
201: QIELKDLTEL EVGDSEAKQE VMEFLDYWGL INFHPFPPTD TGSTASDHDD LGDKESLLNS LYRFQVDEAC PPLVHKPRFT AQATPSGLFP DPMAADELLK
301: QEGPAVEYHC NSCSADCSRK RYHCPKQADF DLCTECFNSG KFSSDMSSSD FILMEPAEAP GVGSGKWTDQ ETLLLLEALE IFKENWNEIA EHVATKTKAQ
401: CMLHFLQMPI EDAFLDQIDY KDPISKDTTD LAVSKDDNSV LKDAPEEAEN KKRVDEDETM KEVPEPEDGN EEKVSQESSK PGDASEETNE MEAEQKTPKL
501: ETAIEERCKD EADENIALKA LTEAFEDVGH SSTPEASFSF ADLGNPVMGL AAFLVRLAGS DVATASARAS IKSLHSNSGM LLATRHCYIL EDPPDNKKDP
601: TKSKSCSADA EGNDDNSHKD DQPEEKSKKA EEVSLNSDDR EMPDTDTGKE TQDSVSEEKQ PGSRTENSTT KLDAVQEKRS SKPVTTDNSE KPVDIICPSQ
701: DKCSGKELQE PLKDGNKLSS ENKDASQSTV SQSAADASQP EASRDVEMKD TLQSEKDPED VVKTVGEKVQ LAKEEGANDV LSTPDKSVSQ QPIGSASAPE
801: NGTAGGNPNI EGKKEKDICE GTKDKYNIEK LKRAAISAIS AAAVKAKNLA KQEEDQIRQL SGSLIEKQQL HKLEAKLSIF NEAESLTMRV REQLERSRQR
901: LYHERAQIIA ARLGVPPSMS SKASLPTNRI AANFANVAQR PPMGMAFPRP PMPRPPGFPV PGSFVAATTM TGSSDPSPGS DNVSSV

Arabidopsis Description

CHB3DNA-binding family protein [Source:TAIR;Acc:AT4G34430]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.