Subcellular Localization
min:
: max
Winner_takes_all: vacuole, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- vacuole 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra017943.1-P | Field mustard | cytosol, endoplasmic reticulum, nucleus | 82.57 | 99.84 |
CDY04665 | Canola | cytosol, nucleus, vacuole | 95.98 | 96.11 |
CDY58587 | Canola | cytosol, endoplasmic reticulum, nucleus | 85.79 | 83.99 |
CDX96578 | Canola | nucleus | 85.66 | 80.48 |
AT1G21700.1 | Thale cress | nucleus | 84.18 | 77.82 |
VIT_18s0001g02160.t01 | Wine grape | nucleus | 31.77 | 53.5 |
KRH53271 | Soybean | nucleus | 53.62 | 50.96 |
KRH64632 | Soybean | nucleus | 53.22 | 50.57 |
KRH17984 | Soybean | nucleus | 48.79 | 47.58 |
Solyc06g060120.2.1 | Tomato | nucleus | 50.13 | 47.28 |
KRH16394 | Soybean | nucleus | 48.39 | 46.52 |
VIT_18s0001g02190.t01 | Wine grape | nucleus | 21.58 | 44.72 |
GSMUA_Achr8P30120_001 | Banana | nucleus | 45.98 | 43.92 |
GSMUA_Achr6P25400_001 | Banana | nucleus | 45.84 | 43.62 |
Os11t0183700-01 | Rice | mitochondrion | 44.91 | 42.73 |
OQU83031 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 43.83 | 42.14 |
Zm00001d000110_P003 | Maize | mitochondrion | 43.97 | 41.84 |
EES15751 | Sorghum | nucleus | 43.03 | 41.47 |
TraesCS5D01G128700.1 | Wheat | nucleus | 43.7 | 41.42 |
Zm00001d041847_P002 | Maize | nucleus | 42.76 | 41.27 |
TraesCS5B01G119800.1 | Wheat | nucleus | 43.7 | 41.11 |
TraesCS5A01G113500.1 | Wheat | nucleus | 43.57 | 41.09 |
TraesCS4B01G097500.1 | Wheat | cytosol, mitochondrion, nucleus | 26.54 | 40.57 |
HORVU4Hr1G017950.27 | Barley | nucleus | 28.69 | 40.23 |
TraesCS4D01G093900.2 | Wheat | cytosol, nucleus, plastid | 41.69 | 40.18 |
HORVU5Hr1G037060.1 | Barley | nucleus, plastid | 43.57 | 39.25 |
TraesCS4A01G218700.1 | Wheat | cytosol, nucleus, plastid | 22.92 | 39.22 |
TraesCS4B01G097600.1 | Wheat | nucleus | 11.53 | 37.72 |
Os12t0176700-00 | Rice | nucleus | 41.02 | 35.92 |
CDX83324 | Canola | nucleus | 15.68 | 23.78 |
CDX95728 | Canola | nucleus | 15.28 | 22.89 |
CDY23721 | Canola | plastid | 13.94 | 22.66 |
CDY37705 | Canola | plastid | 13.54 | 22.0 |
CDX80122 | Canola | nucleus | 14.48 | 21.09 |
CDY66036 | Canola | nucleus | 14.48 | 20.81 |
CDX75433 | Canola | nucleus | 21.45 | 17.11 |
CDY46250 | Canola | nucleus | 21.31 | 16.79 |
CDX76281 | Canola | nucleus | 21.05 | 16.29 |
Protein Annotations
Gene3D:1.10.10.10 | Gene3D:1.10.10.60 | MapMan:12.4.2.1 | GO:A0A078F8V1 | UniProt:A0A078F8V1 | EnsemblPlants:CDY08183 |
ProteinID:CDY08183 | ProteinID:CDY08183.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
EnsemblPlantsGene:GSBRNA2T00125485001 | InterPro:Homeobox-like_sf | InterPro:IPR007526 | InterPro:IPR017884 | InterPro:IPR036388 | PFAM:PF00249 |
PFAM:PF04433 | PFAM:PF16495 | PFscan:PS50934 | PFscan:PS51293 | PANTHER:PTHR12802 | PANTHER:PTHR12802:SF61 |
InterPro:SANT/Myb | InterPro:SANT_dom | SMART:SM00717 | InterPro:SMARCC_C | SUPFAM:SSF46689 | InterPro:SWIRM |
UniParc:UPI0004EE1D3E | InterPro:WH-like_DNA-bd_sf | SEG:seg | : | : | : |
Description
BnaA06g15430DBnaA06g15430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F8V1]
Coordinates
chrLK031983:+:900190..903847
Molecular Weight (calculated)
81237.6 Da
IEP (calculated)
4.639
GRAVY (calculated)
-0.477
Length
746 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEEDEDNNN EEMEDADNAD ELHQNGGATP DPGPGVNEVV EDSGTRVSDF PSVVRRVVIR PHASVTAVVA AERAGLIGES RGQGSLPSLE NISYGQLQAL
101: STVPADSVSL DTERSDGASS AYVISPPLIM EGEGVVKRFG DKVHVLPMHS DWFAPNTVDR LERQVVPQFF SGKSPNHTPE SYMQFRNAIV SKYTDNPEKT
201: LTISDCQGLV DGVEDEDFAR VFRFLDHWGI INYCATSQCH PEPSMDVSDV REDSNGEVHV PSAALTSIES LIKFDKPICG HKSDSSVSCS DVDLPDLDIR
301: IREHLCDNHC NHCSRPLPTV YFQSQKKEDV LLCSDCFHHA RFVAGHSCID FVKVDTTKDY RDQDGENWSD QETLLLLEAV ELYNENWVQI ADHVGSKSKA
401: QCILHFLRLP VEDGLLDNVE LPGVTDPVNP TNGFDNKGTV SNGALPGSSE QESETEINLP FVKSPNPVMA LVAFLASAVG PRVASSCAHE SLMVLSADDR
501: SKSEGKDPSL IDETTCQNGA EAPTPLPQDK VMAAFRAGLS AAATKAKLFA DHEEREIQRL SANIVNHQLK RMELKLKQFA EIETLLMKEC EQVEKTRQRF
601: AAERARMVSA RFGSPGQTSN TNNLQGMSLS TGGGNNVNTL LQQQQQQGSA SSSQPSIIPG FSNNPQLHAQ MQFMARQQQQ QQAFSFGPRL PLNAIQTNAG
701: STPSLFGNNQ LNNNPAGPAS INQPPFSHPM VRSSTGSASG SGLGLN
101: STVPADSVSL DTERSDGASS AYVISPPLIM EGEGVVKRFG DKVHVLPMHS DWFAPNTVDR LERQVVPQFF SGKSPNHTPE SYMQFRNAIV SKYTDNPEKT
201: LTISDCQGLV DGVEDEDFAR VFRFLDHWGI INYCATSQCH PEPSMDVSDV REDSNGEVHV PSAALTSIES LIKFDKPICG HKSDSSVSCS DVDLPDLDIR
301: IREHLCDNHC NHCSRPLPTV YFQSQKKEDV LLCSDCFHHA RFVAGHSCID FVKVDTTKDY RDQDGENWSD QETLLLLEAV ELYNENWVQI ADHVGSKSKA
401: QCILHFLRLP VEDGLLDNVE LPGVTDPVNP TNGFDNKGTV SNGALPGSSE QESETEINLP FVKSPNPVMA LVAFLASAVG PRVASSCAHE SLMVLSADDR
501: SKSEGKDPSL IDETTCQNGA EAPTPLPQDK VMAAFRAGLS AAATKAKLFA DHEEREIQRL SANIVNHQLK RMELKLKQFA EIETLLMKEC EQVEKTRQRF
601: AAERARMVSA RFGSPGQTSN TNNLQGMSLS TGGGNNVNTL LQQQQQQGSA SSSQPSIIPG FSNNPQLHAQ MQFMARQQQQ QQAFSFGPRL PLNAIQTNAG
701: STPSLFGNNQ LNNNPAGPAS INQPPFSHPM VRSSTGSASG SGLGLN
001: MPASEDRRGK WKRKKRGGLS AARKPKQEEE DMEEEDEENN NNNNEEMDDV ENADELQQNG GATPDPGLGI GEVVEDSGSR ISDFPAVVKR VVIRPHASVM
101: AVVAAERAGL IGETRGQGSL PALENISFGQ LQALSTVPAD SLDLERSDGS SSAYVISPPP IMDGEGVVKR FGDLVHVLPM HSDWFAPNTV DRLERQVVPQ
201: FFSGKSPNHT PESYMEFRNA IVSKYVENPE KTLTISDCQG LVDGVDIEDF ARVFRFLDHW GIINYCATAQ SHPGPLRDVS DVREDTNGEV NVPSAALTSI
301: DSLIKFDKPN CRHKGGEVYS SLPSLDGDSP DLDIRIREHL CDSHCNHCSR PLPTVYFQSQ KKGDILLCCD CFHHGRFVVG HSCLDFVRVD PMKFYGDQDG
401: DNWTDQETLL LLEAVELYNE NWVQIADHVG SKSKAQCILH FLRLPVEDGL LDNVEVSGVT NTENPTNGYD HKGTDSNGDL PGYSEQGSDT EIKLPFVKSP
501: NPVMALVAFL ASAVGPRVAA SCAHESLSVL SEDDRMKSEG MQGKEASLLD GENQQQDGAH KTSSQNGAEA QTPLPQDKVM AAFRAGLSAA ATKAKLFADH
601: EEREIQRLSA NIVNHQLKRM ELKLKQFAEI ETLLMKECEQ VEKTRQRFSA ERARMLSARF GSPGGISPQT NNLQGMSLST GGNNINSLMH QQHQQQQASA
701: TSQPSIIPGF SNNPQVQAQM HFMARQQQQQ QQQQQQQQQA FSFGPRLPLN AIQTNAGSTA SPNVMFGNNQ LNNPAAAGAA SINQPSFSHP MVRSSTGSGS
801: GSGLGLN
101: AVVAAERAGL IGETRGQGSL PALENISFGQ LQALSTVPAD SLDLERSDGS SSAYVISPPP IMDGEGVVKR FGDLVHVLPM HSDWFAPNTV DRLERQVVPQ
201: FFSGKSPNHT PESYMEFRNA IVSKYVENPE KTLTISDCQG LVDGVDIEDF ARVFRFLDHW GIINYCATAQ SHPGPLRDVS DVREDTNGEV NVPSAALTSI
301: DSLIKFDKPN CRHKGGEVYS SLPSLDGDSP DLDIRIREHL CDSHCNHCSR PLPTVYFQSQ KKGDILLCCD CFHHGRFVVG HSCLDFVRVD PMKFYGDQDG
401: DNWTDQETLL LLEAVELYNE NWVQIADHVG SKSKAQCILH FLRLPVEDGL LDNVEVSGVT NTENPTNGYD HKGTDSNGDL PGYSEQGSDT EIKLPFVKSP
501: NPVMALVAFL ASAVGPRVAA SCAHESLSVL SEDDRMKSEG MQGKEASLLD GENQQQDGAH KTSSQNGAEA QTPLPQDKVM AAFRAGLSAA ATKAKLFADH
601: EEREIQRLSA NIVNHQLKRM ELKLKQFAEI ETLLMKECEQ VEKTRQRFSA ERARMLSARF GSPGGISPQT NNLQGMSLST GGNNINSLMH QQHQQQQASA
701: TSQPSIIPGF SNNPQVQAQM HFMARQQQQQ QQQQQQQQQA FSFGPRLPLN AIQTNAGSTA SPNVMFGNNQ LNNPAAAGAA SINQPSFSHP MVRSSTGSGS
801: GSGLGLN
Arabidopsis Description
SWI3CSWI/SNF complex subunit SWI3C [Source:UniProtKB/Swiss-Prot;Acc:Q9XI07]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.