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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: vacuole, nucleus, cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 1
  • mitochondrion 1
  • vacuole 1
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra017943.1-P Field mustard cytosol, endoplasmic reticulum, nucleus 82.57 99.84
CDY04665 Canola cytosol, nucleus, vacuole 95.98 96.11
CDY58587 Canola cytosol, endoplasmic reticulum, nucleus 85.79 83.99
CDX96578 Canola nucleus 85.66 80.48
AT1G21700.1 Thale cress nucleus 84.18 77.82
VIT_18s0001g02160.t01 Wine grape nucleus 31.77 53.5
KRH53271 Soybean nucleus 53.62 50.96
KRH64632 Soybean nucleus 53.22 50.57
KRH17984 Soybean nucleus 48.79 47.58
Solyc06g060120.2.1 Tomato nucleus 50.13 47.28
KRH16394 Soybean nucleus 48.39 46.52
VIT_18s0001g02190.t01 Wine grape nucleus 21.58 44.72
GSMUA_Achr8P30120_001 Banana nucleus 45.98 43.92
GSMUA_Achr6P25400_001 Banana nucleus 45.84 43.62
Os11t0183700-01 Rice mitochondrion 44.91 42.73
OQU83031 Sorghum cytosol, mitochondrion, nucleus, plastid 43.83 42.14
Zm00001d000110_P003 Maize mitochondrion 43.97 41.84
EES15751 Sorghum nucleus 43.03 41.47
TraesCS5D01G128700.1 Wheat nucleus 43.7 41.42
Zm00001d041847_P002 Maize nucleus 42.76 41.27
TraesCS5B01G119800.1 Wheat nucleus 43.7 41.11
TraesCS5A01G113500.1 Wheat nucleus 43.57 41.09
TraesCS4B01G097500.1 Wheat cytosol, mitochondrion, nucleus 26.54 40.57
HORVU4Hr1G017950.27 Barley nucleus 28.69 40.23
TraesCS4D01G093900.2 Wheat cytosol, nucleus, plastid 41.69 40.18
HORVU5Hr1G037060.1 Barley nucleus, plastid 43.57 39.25
TraesCS4A01G218700.1 Wheat cytosol, nucleus, plastid 22.92 39.22
TraesCS4B01G097600.1 Wheat nucleus 11.53 37.72
Os12t0176700-00 Rice nucleus 41.02 35.92
CDX83324 Canola nucleus 15.68 23.78
CDX95728 Canola nucleus 15.28 22.89
CDY23721 Canola plastid 13.94 22.66
CDY37705 Canola plastid 13.54 22.0
CDX80122 Canola nucleus 14.48 21.09
CDY66036 Canola nucleus 14.48 20.81
CDX75433 Canola nucleus 21.45 17.11
CDY46250 Canola nucleus 21.31 16.79
CDX76281 Canola nucleus 21.05 16.29
Protein Annotations
Gene3D:1.10.10.10Gene3D:1.10.10.60MapMan:12.4.2.1GO:A0A078F8V1UniProt:A0A078F8V1EnsemblPlants:CDY08183
ProteinID:CDY08183ProteinID:CDY08183.1ncoils:CoilGO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
EnsemblPlantsGene:GSBRNA2T00125485001InterPro:Homeobox-like_sfInterPro:IPR007526InterPro:IPR017884InterPro:IPR036388PFAM:PF00249
PFAM:PF04433PFAM:PF16495PFscan:PS50934PFscan:PS51293PANTHER:PTHR12802PANTHER:PTHR12802:SF61
InterPro:SANT/MybInterPro:SANT_domSMART:SM00717InterPro:SMARCC_CSUPFAM:SSF46689InterPro:SWIRM
UniParc:UPI0004EE1D3EInterPro:WH-like_DNA-bd_sfSEG:seg:::
Description
BnaA06g15430DBnaA06g15430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F8V1]
Coordinates
chrLK031983:+:900190..903847
Molecular Weight (calculated)
81237.6 Da
IEP (calculated)
4.639
GRAVY (calculated)
-0.477
Length
746 amino acids
Sequence
(BLAST)
001: MEEEDEDNNN EEMEDADNAD ELHQNGGATP DPGPGVNEVV EDSGTRVSDF PSVVRRVVIR PHASVTAVVA AERAGLIGES RGQGSLPSLE NISYGQLQAL
101: STVPADSVSL DTERSDGASS AYVISPPLIM EGEGVVKRFG DKVHVLPMHS DWFAPNTVDR LERQVVPQFF SGKSPNHTPE SYMQFRNAIV SKYTDNPEKT
201: LTISDCQGLV DGVEDEDFAR VFRFLDHWGI INYCATSQCH PEPSMDVSDV REDSNGEVHV PSAALTSIES LIKFDKPICG HKSDSSVSCS DVDLPDLDIR
301: IREHLCDNHC NHCSRPLPTV YFQSQKKEDV LLCSDCFHHA RFVAGHSCID FVKVDTTKDY RDQDGENWSD QETLLLLEAV ELYNENWVQI ADHVGSKSKA
401: QCILHFLRLP VEDGLLDNVE LPGVTDPVNP TNGFDNKGTV SNGALPGSSE QESETEINLP FVKSPNPVMA LVAFLASAVG PRVASSCAHE SLMVLSADDR
501: SKSEGKDPSL IDETTCQNGA EAPTPLPQDK VMAAFRAGLS AAATKAKLFA DHEEREIQRL SANIVNHQLK RMELKLKQFA EIETLLMKEC EQVEKTRQRF
601: AAERARMVSA RFGSPGQTSN TNNLQGMSLS TGGGNNVNTL LQQQQQQGSA SSSQPSIIPG FSNNPQLHAQ MQFMARQQQQ QQAFSFGPRL PLNAIQTNAG
701: STPSLFGNNQ LNNNPAGPAS INQPPFSHPM VRSSTGSASG SGLGLN
Best Arabidopsis Sequence Match ( AT1G21700.1 )
(BLAST)
001: MPASEDRRGK WKRKKRGGLS AARKPKQEEE DMEEEDEENN NNNNEEMDDV ENADELQQNG GATPDPGLGI GEVVEDSGSR ISDFPAVVKR VVIRPHASVM
101: AVVAAERAGL IGETRGQGSL PALENISFGQ LQALSTVPAD SLDLERSDGS SSAYVISPPP IMDGEGVVKR FGDLVHVLPM HSDWFAPNTV DRLERQVVPQ
201: FFSGKSPNHT PESYMEFRNA IVSKYVENPE KTLTISDCQG LVDGVDIEDF ARVFRFLDHW GIINYCATAQ SHPGPLRDVS DVREDTNGEV NVPSAALTSI
301: DSLIKFDKPN CRHKGGEVYS SLPSLDGDSP DLDIRIREHL CDSHCNHCSR PLPTVYFQSQ KKGDILLCCD CFHHGRFVVG HSCLDFVRVD PMKFYGDQDG
401: DNWTDQETLL LLEAVELYNE NWVQIADHVG SKSKAQCILH FLRLPVEDGL LDNVEVSGVT NTENPTNGYD HKGTDSNGDL PGYSEQGSDT EIKLPFVKSP
501: NPVMALVAFL ASAVGPRVAA SCAHESLSVL SEDDRMKSEG MQGKEASLLD GENQQQDGAH KTSSQNGAEA QTPLPQDKVM AAFRAGLSAA ATKAKLFADH
601: EEREIQRLSA NIVNHQLKRM ELKLKQFAEI ETLLMKECEQ VEKTRQRFSA ERARMLSARF GSPGGISPQT NNLQGMSLST GGNNINSLMH QQHQQQQASA
701: TSQPSIIPGF SNNPQVQAQM HFMARQQQQQ QQQQQQQQQA FSFGPRLPLN AIQTNAGSTA SPNVMFGNNQ LNNPAAAGAA SINQPSFSHP MVRSSTGSGS
801: GSGLGLN
Arabidopsis Description
SWI3CSWI/SNF complex subunit SWI3C [Source:UniProtKB/Swiss-Prot;Acc:Q9XI07]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.