CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH16394
KRH17984
KRH53271
KRH53340
KRH64580
KRH64632

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47620.1	KRH16394	AT1G21700.1	16055636
AT2G47620.1	KRH17984	AT1G21700.1	16055636
AT2G47620.1	KRH53271	AT1G21700.1	16055636
AT2G47620.1	KRH64632	AT1G21700.1	16055636
AT2G47620.1	KRH53340	AT2G47620.1	16055636
AT2G47620.1	KRH64580	AT2G47620.1	16055636

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64580	Soybean	nucleus	82.41	81.78
VIT_17s0000g00990.t01	Wine grape	cytosol	53.92	50.09
CDX83324	Canola	nucleus	45.51	48.37
CDX95728	Canola	nucleus	45.51	47.79
AT2G47620.1	Thale cress	nucleus	46.27	47.27
CDY66036	Canola	nucleus	46.27	46.63
Bra004441.1-P	Field mustard	nucleus	44.17	44.94
CDX80122	Canola	nucleus	43.79	44.73
Solyc03g097450.2.1	Tomato	nucleus	45.7	41.71
GSMUA_Achr9P16230_001	Banana	nucleus	39.39	35.7
TraesCS2B01G356600.1	Wheat	nucleus	37.48	35.19
Os04t0480300-01	Rice	cytosol	37.48	35.0
EES10999	Sorghum	nucleus	36.9	34.77
TraesCS2D01G337400.1	Wheat	nucleus	36.14	33.99
HORVU2Hr1G082880.12	Barley	nucleus	22.56	31.05
KRH60872	Soybean	nucleus	21.99	23.76
KRH51554	Soybean	nucleus	20.84	22.2
Zm00001d003284_P001	Maize	nucleus	35.37	20.98
KRH17984	Soybean	nucleus	23.14	15.82
KRH16394	Soybean	nucleus	22.94	15.46
KRH64632	Soybean	nucleus	22.75	15.16
KRH53271	Soybean	nucleus	22.56	15.03
KRH24488	Soybean	nucleus	20.08	10.33
KRH29482	Soybean	nucleus	20.08	10.03

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	EntrezGene:100800135	MapMan:12.4.2.1	EMBL:ACUP02003459	EnsemblPlantsGene:GLYMA_06G120200
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Homeobox-like_sf	UniProt:I1KAH0	InterPro:IPR007526
InterPro:IPR017884	InterPro:IPR036388	EnsemblPlants:KRH53340	ProteinID:KRH53340	ProteinID:KRH53340.1	PFAM:PF00249
PFAM:PF04433	PFAM:PF16495	PFscan:PS50934	PFscan:PS51293	PANTHER:PTHR12802	PANTHER:PTHR12802:SF41
InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00717	InterPro:SMARCC_C	SUPFAM:SSF46689	InterPro:SWIRM
UniParc:UPI0002968539	InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:9774170..9777674

Molecular Weight (calculated)

58434.6 Da

IEP (calculated)

4.899

GRAVY (calculated)

-0.535

Length

523 amino acids

Sequence
(BLAST)

001: MMEVTKDPNS DFELELYTIP SSSRWFAWEE IHETERTAFK EYFDGNSITR TPKIYKEYRD FIINKYREEP SRRLTFTEVR KSLVGDVTFL HKAFLLLEHW
101: GLINYGTAQP SSGADAAEEE EEHRKVRLEE GAPGGIRVAA TPNSLKPMLL PRNGKSGVNA SGASLKLPPL ASYSDVYGDL IRQKEGNCGL CGHKCGSGHY
201: RCTQDNFIIC INCFKSGNYG EKRSTEDFVL SESSENSGKH DTVWTEAETL LLLESVLKHG DDWELVAQSV QTKTKLDCIS KLIELPFGEL MLGPAHRNVN
301: INDANGIVNN AKQVQSSSSD NQEISKTKDQ SPEFTNENEQ NGDAVKESPS KRQRVASLSD SSSSLMNQVG LISNVVDPHI TAAAADAAVS ALCDEDLCPR
401: EIFDVDGEEG LEMERSSLSE IPLTLRVRAA TATALGAAAA RAKLLADQED REIEHLVATI IEAQIDKMLQ KVKHFDDLEL LMEKEHAEME NKKDSILTER
501: IDVLRRTFRS GVTRWKDYSY VKS

Best Arabidopsis Sequence Match ( AT2G47620.1 )
(BLAST)

001: MEATDPSAEI ELYTIPAQSS WFLWDDIHEI ERREFAEFFT ESSITRTPKV YKEYRDFIIN KFREDTCRRL TFTSVRKFLV GDVNLLQKVF LFLEKWGLIN
101: FSSSLKKNDH LLSVDNAKIE QGTPAGIRVT ATPNSLRPIT APPLVEERVE TGIKVPPLTS YSDVFSDLKK PDHVLVCAHC GERCDSPFYQ HNKGIVNICE
201: KCFKNGNYGE NNTADDFKLI GNSAAAVWTE EEILLLLESV LKHGDDWELI SQSVSTKSRL DCISKLIELP FGEFLMGSAS GRLNPSILTE DENTEQVQTD
301: GQEHEETETR EEKEDRVNED EPPAKRKRVA LISEGDSSLM KQVAAMASKV GPSVATAAAK AALAALCDEA SCPKEIFDTD DYSNFTVDRA NGEKDTDMEE
401: QQEEKDGPQG LPVALRIRAS VATALGAAAA QAKILADQEE REMEQLAATV IEQQLKKLQS KLKFLDDLES IMDEEEKVIE GVKETIIQER VSVLQCAFRS
501: GITKRWDHTY VK

Arabidopsis Description

SWI3ASWI/SNF complex subunit SWI3A [Source:UniProtKB/Swiss-Prot;Acc:Q8W475]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.