Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 5
- vacuole 6
- plasma membrane 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032357.1-P | Field mustard | extracellular, vacuole | 82.84 | 89.42 |
| CDX99881 | Canola | extracellular, vacuole | 82.6 | 89.15 |
| Bra010800.1-P | Field mustard | vacuole | 83.33 | 89.01 |
| CDY26296 | Canola | extracellular, plasma membrane, vacuole | 86.76 | 88.72 |
| CDX90225 | Canola | vacuole | 87.75 | 88.4 |
| CDY63842 | Canola | golgi, vacuole | 58.58 | 82.99 |
| VIT_10s0003g03690.t01 | Wine grape | extracellular | 64.95 | 70.67 |
| AT4G18340.1 | Thale cress | vacuole | 60.54 | 62.22 |
| EER88444 | Sorghum | extracellular, vacuole | 54.17 | 54.17 |
| TraesCS7A01G349200.1 | Wheat | endoplasmic reticulum, extracellular | 53.68 | 54.07 |
| Zm00001d046134_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 53.92 | 54.05 |
| TraesCS7D01G329400.1 | Wheat | endoplasmic reticulum, extracellular | 53.43 | 53.83 |
| TraesCS7B01G233500.1 | Wheat | extracellular | 53.19 | 53.58 |
| HORVU7Hr1G079650.7 | Barley | extracellular, vacuole | 51.96 | 48.29 |
| AT2G27500.1 | Thale cress | vacuole | 42.16 | 43.88 |
| Os06t0531000-00 | Rice | vacuole | 51.72 | 42.54 |
| AT1G32860.1 | Thale cress | extracellular, plasma membrane, vacuole | 42.65 | 40.85 |
| AT5G42100.1 | Thale cress | extracellular, vacuole | 41.91 | 40.24 |
| AT3G46570.1 | Thale cress | vacuole | 35.05 | 40.17 |
| AT3G15800.1 | Thale cress | golgi, plastid, vacuole | 38.73 | 39.6 |
| AT2G26600.1 | Thale cress | endoplasmic reticulum, golgi, vacuole | 35.78 | 37.63 |
| AT5G42720.1 | Thale cress | extracellular, plasma membrane, vacuole | 40.2 | 37.44 |
| AT4G26830.2 | Thale cress | endoplasmic reticulum, extracellular | 41.42 | 36.82 |
| AT5G55180.2 | Thale cress | endoplasmic reticulum, extracellular | 41.91 | 36.77 |
| AT2G05790.1 | Thale cress | extracellular, vacuole | 41.91 | 36.23 |
| AT5G24318.1 | Thale cress | extracellular | 39.95 | 35.59 |
| AT3G55430.1 | Thale cress | extracellular | 34.8 | 31.63 |
| AT2G16230.1 | Thale cress | vacuole | 38.24 | 31.01 |
| AT4G34480.1 | Thale cress | extracellular, plasma membrane, vacuole | 37.99 | 30.75 |
| AT3G07320.1 | Thale cress | extracellular, vacuole | 32.84 | 29.13 |
| AT5G56590.1 | Thale cress | extracellular, plasma membrane, vacuole | 36.03 | 29.05 |
| AT3G23770.1 | Thale cress | extracellular | 32.84 | 28.15 |
| AT4G14080.1 | Thale cress | vacuole | 32.84 | 28.03 |
| AT4G29360.2 | Thale cress | vacuole | 37.01 | 27.76 |
| AT3G13560.4 | Thale cress | plasma membrane | 34.07 | 27.52 |
| AT2G01630.1 | Thale cress | extracellular | 33.58 | 27.35 |
| AT1G66250.1 | Thale cress | vacuole | 31.86 | 25.74 |
| AT1G11820.2 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 31.86 | 25.44 |
| AT2G39640.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 32.35 | 24.04 |
Protein Annotations
| KEGG:00500+3.2.1.39 | Gene3D:3.20.20.80 | MapMan:50.3.2 | EntrezGene:839887 | ProteinID:AEE31176.1 | ArrayExpress:AT1G30080 |
| EnsemblPlantsGene:AT1G30080 | RefSeq:AT1G30080 | TAIR:AT1G30080 | RefSeq:AT1G30080-TAIR-G | EnsemblPlants:AT1G30080.1 | TAIR:AT1G30080.1 |
| Unigene:At.43065 | UniProt:F4I4R0 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004553 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0016020 | GO:GO:0016787 | GO:GO:0030246 | GO:GO:0030247 | GO:GO:0046658 | InterPro:Glyco_hydro_17 |
| InterPro:Glycoside_hydrolase_SF | RefSeq:NP_174300.2 | PFAM:PF00332 | PO:PO:0000230 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009046 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR32227 |
| PANTHER:PTHR32227:SF85 | SUPFAM:SSF51445 | SignalP:SignalP-noTM | UniParc:UPI0000196F34 | SEG:seg | : |
Description
Glycosyl hydrolase superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I4R0]
Coordinates
chr1:-:10550855..10553295
Molecular Weight (calculated)
45415.6 Da
IEP (calculated)
6.527
GRAVY (calculated)
-0.052
Length
408 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNMFSRIAM TNSIVLLLFS LTFLEHGLLF QRVSSLGINY GQVGDNLPPP DKVLQLLSSL HINKTRIYDT NPRVLTSFAN SNIELFVTVE NEMLPSLVDP
101: QQALQWVTTR IKPYFPATKI GGIAVGNELY TDDDSSLIGY LMPAMMSIHG ALVQTGLDKY IQVSTPNSLS VLQESYPPSA GCFRPEVAGV MTQLLGFLRN
201: TNSPFWINAY PYFAYKDSPT KIPLDYVLFN PNPGMVDPYT KYRYDNMLYA QVDAVIFAMA RLGFKDIEVG VSETGWPSKG DGDEVGATVA NAAVYNKNIL
301: RRQLQNEGTP LRPNLSFDVY LFALFNEDLK PGPTSERNYG LYQPDETMTY NVGLLSSSSL TSTSTTSSTS IISLTSSAST ALKKGKQRLM YWTCVYLLAI
401: HMLIRRSY
101: QQALQWVTTR IKPYFPATKI GGIAVGNELY TDDDSSLIGY LMPAMMSIHG ALVQTGLDKY IQVSTPNSLS VLQESYPPSA GCFRPEVAGV MTQLLGFLRN
201: TNSPFWINAY PYFAYKDSPT KIPLDYVLFN PNPGMVDPYT KYRYDNMLYA QVDAVIFAMA RLGFKDIEVG VSETGWPSKG DGDEVGATVA NAAVYNKNIL
301: RRQLQNEGTP LRPNLSFDVY LFALFNEDLK PGPTSERNYG LYQPDETMTY NVGLLSSSSL TSTSTTSSTS IISLTSSAST ALKKGKQRLM YWTCVYLLAI
401: HMLIRRSY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.