Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 5
- vacuole 5
- plasma membrane 7
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra027421.1-P | Field mustard | extracellular, plasma membrane, vacuole | 84.55 | 85.23 |
| CDY59252 | Canola | extracellular, plasma membrane, vacuole | 68.12 | 84.31 |
| CDY23618 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 68.91 | 82.66 |
| VIT_06s0004g00720.t01 | Wine grape | extracellular, vacuole | 61.58 | 65.75 |
| KRH42823 | Soybean | extracellular, plasma membrane, vacuole | 63.96 | 65.12 |
| KRH58918 | Soybean | endoplasmic reticulum | 63.37 | 64.52 |
| KRH05027 | Soybean | extracellular, plasma membrane, vacuole | 62.57 | 63.45 |
| KRH16072 | Soybean | extracellular, plasma membrane, vacuole | 62.18 | 62.67 |
| PGSC0003DMT400081837 | Potato | extracellular | 61.39 | 62.25 |
| OQU90151 | Sorghum | vacuole | 50.89 | 52.02 |
| Zm00001d006658_P005 | Maize | extracellular, plasma membrane, vacuole | 50.3 | 51.63 |
| TraesCS2D01G201000.1 | Wheat | extracellular, plasma membrane, vacuole | 50.1 | 51.32 |
| TraesCS2A01G186900.1 | Wheat | extracellular, plasma membrane, vacuole | 50.1 | 51.32 |
| HORVU2Hr1G036980.5 | Barley | plasma membrane | 49.9 | 51.22 |
| HORVU5Hr1G048630.2 | Barley | plasma membrane, vacuole | 50.3 | 51.21 |
| TraesCS2B01G220300.1 | Wheat | plasma membrane | 49.9 | 51.12 |
| Os07t0577300-01 | Rice | extracellular | 49.9 | 50.6 |
| Zm00001d021903_P001 | Maize | extracellular, plasma membrane, vacuole | 50.1 | 50.6 |
| GSMUA_Achr6P29690_001 | Banana | extracellular, plasma membrane, vacuole | 52.48 | 50.57 |
| TraesCS5B01G153900.1 | Wheat | plasma membrane | 49.7 | 50.5 |
| GSMUA_Achr8P15370_001 | Banana | extracellular, plasma membrane, vacuole | 51.88 | 50.48 |
| TraesCS5A01G155600.1 | Wheat | plasma membrane | 49.51 | 50.3 |
| GSMUA_Achr2P17770_001 | Banana | plasma membrane, vacuole | 39.01 | 49.5 |
| TraesCS5D01G160700.1 | Wheat | plasma membrane | 49.9 | 48.18 |
| AT2G01630.1 | Thale cress | extracellular | 47.72 | 48.1 |
| AT1G11820.2 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 43.96 | 43.44 |
| AT1G66250.1 | Thale cress | vacuole | 42.97 | 42.97 |
| AT2G05790.1 | Thale cress | extracellular, vacuole | 35.84 | 38.35 |
| AT4G26830.2 | Thale cress | endoplasmic reticulum, extracellular | 34.06 | 37.47 |
| AT5G55180.2 | Thale cress | endoplasmic reticulum, extracellular | 33.66 | 36.56 |
| AT5G24318.1 | Thale cress | extracellular | 33.07 | 36.46 |
| AT5G56590.1 | Thale cress | extracellular, plasma membrane, vacuole | 35.64 | 35.57 |
| AT3G15800.1 | Thale cress | golgi, plastid, vacuole | 27.33 | 34.59 |
| AT4G34480.1 | Thale cress | extracellular, plasma membrane, vacuole | 34.46 | 34.52 |
| AT3G46570.1 | Thale cress | vacuole | 24.16 | 34.27 |
| AT3G55430.1 | Thale cress | extracellular | 30.3 | 34.08 |
| AT1G30080.1 | Thale cress | vacuole | 27.52 | 34.07 |
| AT4G29360.2 | Thale cress | vacuole | 36.63 | 34.01 |
| AT2G16230.1 | Thale cress | vacuole | 33.86 | 34.0 |
| AT4G18340.1 | Thale cress | vacuole | 26.53 | 33.75 |
| AT3G07320.1 | Thale cress | extracellular, vacuole | 30.69 | 33.7 |
| AT3G23770.1 | Thale cress | extracellular | 31.68 | 33.61 |
| AT2G26600.1 | Thale cress | endoplasmic reticulum, golgi, vacuole | 25.54 | 33.25 |
| AT2G27500.1 | Thale cress | vacuole | 25.15 | 32.4 |
| AT5G42100.1 | Thale cress | extracellular, vacuole | 26.93 | 32.0 |
| AT1G32860.1 | Thale cress | extracellular, plasma membrane, vacuole | 26.53 | 31.46 |
| AT5G42720.1 | Thale cress | extracellular, plasma membrane, vacuole | 26.93 | 31.05 |
| AT4G14080.1 | Thale cress | vacuole | 29.11 | 30.75 |
| AT2G39640.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 28.12 | 25.87 |
Protein Annotations
| KEGG:00500+3.2.1.39 | Gene3D:3.20.20.80 | MapMan:50.3.2 | EntrezGene:820558 | ProteinID:AEE75372.1 | ProteinID:AEE75373.1 |
| ProteinID:AEE75374.1 | EMBL:AK317283 | ProteinID:ANM64915.1 | ProteinID:ANM64916.1 | ArrayExpress:AT3G13560 | EnsemblPlantsGene:AT3G13560 |
| RefSeq:AT3G13560 | TAIR:AT3G13560 | RefSeq:AT3G13560-TAIR-G | EnsemblPlants:AT3G13560.4 | EMBL:AY034940 | EMBL:AY063117 |
| Unigene:At.8269 | ProteinID:BAB01763.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004553 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0005975 | GO:GO:0006950 | GO:GO:0006952 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016020 | GO:GO:0016787 | GO:GO:0016798 | GO:GO:0030246 |
| GO:GO:0030247 | GO:GO:0031225 | GO:GO:0042973 | GO:GO:0046658 | InterPro:Glyco_hydro_17 | InterPro:Glycoside_hydrolase_SF |
| RefSeq:NP_001326916.1 | RefSeq:NP_001326917.1 | RefSeq:NP_187965.1 | RefSeq:NP_974302.1 | RefSeq:NP_974303.1 | PFAM:PF00332 |
| PFAM:PF07983 | ScanProsite:PS00587 | PFscan:PS51257 | PANTHER:PTHR32227 | PANTHER:PTHR32227:SF232 | UniProt:Q94CD8 |
| SMART:SM00768 | SUPFAM:SSF51445 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI00000486FE | InterPro:X8 |
| SEG:seg | : | : | : | : | : |
Description
Glucan endo-1,3-beta-glucosidase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q94CD8]
Coordinates
chr3:-:4425215..4428192
Molecular Weight (calculated)
54418.9 Da
IEP (calculated)
6.304
GRAVY (calculated)
0.053
Length
505 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLPRWFAEA LLLLLSILAC SNAAFIGVNI GTDLTNMPPP SDIVTLLKSQ QITHVRLYDA NSHMLKAFAN TSIEVMVGVT NEEILKIGRF PSAAAAWVNK
101: NVAAYIPSTN ITAIAVGSEV LTTIPHVAPI LASALNNIHK ALVASNLNFK VKVSSPMSMD IMPKPFPPST STFSPSWNTT VYQLLQFLKN TGSFFMLNAY
201: PYYGYTTANG IFPLDYALFK QLSPVKQIVD PNTLLHYNSM FDAMVDAAYY SMEALNFSKI PVVVTETGWP SSGGSDEAAA TVANAETFNT NLIKRVLNNS
301: GPPSQPDIPI NTYIYELYNE DKRSGPVSER NWGILFPNGT SVYPLSLSGG SSSAALNGSS MFCVAKADAD DDKLVDGLNW ACGQGRANCA AIQPGQPCYL
401: PNDVKSHASF AFNDYYQKMK SAGGTCDFDG TAITTTRDPS YRTCAYTGSL NANATNGNFP PDALGPASPL GGNANARIIF SYHLPILAPL ALTLLQLLLQ
501: HDRLL
101: NVAAYIPSTN ITAIAVGSEV LTTIPHVAPI LASALNNIHK ALVASNLNFK VKVSSPMSMD IMPKPFPPST STFSPSWNTT VYQLLQFLKN TGSFFMLNAY
201: PYYGYTTANG IFPLDYALFK QLSPVKQIVD PNTLLHYNSM FDAMVDAAYY SMEALNFSKI PVVVTETGWP SSGGSDEAAA TVANAETFNT NLIKRVLNNS
301: GPPSQPDIPI NTYIYELYNE DKRSGPVSER NWGILFPNGT SVYPLSLSGG SSSAALNGSS MFCVAKADAD DDKLVDGLNW ACGQGRANCA AIQPGQPCYL
401: PNDVKSHASF AFNDYYQKMK SAGGTCDFDG TAITTTRDPS YRTCAYTGSL NANATNGNFP PDALGPASPL GGNANARIIF SYHLPILAPL ALTLLQLLLQ
501: HDRLL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.