Factsheet for VIT_06s0004g00720.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42823	Soybean	extracellular, plasma membrane, vacuole	71.04	67.74
KRH58918	Soybean	endoplasmic reticulum	69.98	66.73
KRH05027	Soybean	extracellular, plasma membrane, vacuole	68.5	65.06
PGSC0003DMT400081837	Potato	extracellular	67.86	64.46
KRH16072	Soybean	extracellular, plasma membrane, vacuole	68.08	64.27
AT3G13560.4	Thale cress	plasma membrane	65.75	61.58
Bra027421.1-P	Field mustard	extracellular, plasma membrane, vacuole	63.21	59.68
CDY59252	Canola	extracellular, plasma membrane, vacuole	48.41	56.13
CDY23618	Canola	endoplasmic reticulum, plasma membrane, vacuole	48.41	54.39
GSMUA_Achr8P15370_001	Banana	extracellular, plasma membrane, vacuole	57.93	52.79
GSMUA_Achr2P17770_001	Banana	plasma membrane, vacuole	43.97	52.26
GSMUA_Achr6P29690_001	Banana	extracellular, plasma membrane, vacuole	57.29	51.72
Os07t0577300-01	Rice	extracellular	54.33	51.61
HORVU2Hr1G036980.5	Barley	plasma membrane	53.49	51.42
OQU90151	Sorghum	vacuole	53.49	51.21
TraesCS2A01G186900.1	Wheat	extracellular, plasma membrane, vacuole	53.28	51.12
Zm00001d006658_P005	Maize	extracellular, plasma membrane, vacuole	53.07	51.02
TraesCS2D01G201000.1	Wheat	extracellular, plasma membrane, vacuole	52.85	50.71
TraesCS2B01G220300.1	Wheat	plasma membrane	52.43	50.3
TraesCS5B01G153900.1	Wheat	plasma membrane	52.85	50.3
HORVU5Hr1G048630.2	Barley	plasma membrane, vacuole	52.64	50.2
Zm00001d021903_P001	Maize	extracellular, plasma membrane, vacuole	52.85	50.0
TraesCS5A01G155600.1	Wheat	plasma membrane	52.43	49.9
VIT_01s0011g05500.t01	Wine grape	extracellular, plasma membrane, vacuole	50.11	47.59
VIT_14s0006g00520.t01	Wine grape	extracellular, plasma membrane, vacuole	49.68	47.57
TraesCS5D01G160700.1	Wheat	plasma membrane	52.43	47.42
VIT_10s0116g01640.t01	Wine grape	extracellular, vacuole	48.41	40.39
VIT_19s0090g01070.t01	Wine grape	extracellular, plasma membrane, vacuole	37.0	37.16
VIT_16s0098g01560.t01	Wine grape	extracellular	34.88	35.79
VIT_12s0059g01320.t01	Wine grape	extracellular, vacuole	35.52	35.67
VIT_18s0122g00980.t01	Wine grape	extracellular	34.04	35.0
VIT_10s0003g03690.t01	Wine grape	extracellular	27.27	34.4
VIT_11s0016g02960.t01	Wine grape	extracellular, vacuole	35.52	34.01
VIT_06s0004g04750.t01	Wine grape	extracellular	25.58	33.61
VIT_18s0001g12390.t01	Wine grape	extracellular, vacuole	32.98	33.55
VIT_11s0016g05560.t01	Wine grape	golgi, vacuole	27.7	33.25
VIT_09s0002g06880.t01	Wine grape	vacuole	27.91	33.08
VIT_13s0019g01180.t01	Wine grape	extracellular, vacuole	30.87	32.66
VIT_03s0063g02490.t01	Wine grape	endoplasmic reticulum, extracellular	33.62	32.45
VIT_02s0025g02770.t01	Wine grape	extracellular	27.27	31.85
VIT_06s0080g00420.t01	Wine grape	extracellular, mitochondrion, plastid, vacuole	27.48	31.71
VIT_05s0062g01430.t01	Wine grape	extracellular, vacuole	30.66	31.05

Protein Annotations

KEGG:00500+3.2.1.39	EntrezGene:100255211	wikigene:100255211	Gene3D:3.20.20.80	MapMan:50.3.2	EMBL:AM449288
ProteinID:CAN72077	ProteinID:CAN72077.1	ProteinID:CCB43797	ProteinID:CCB43797.1	UniProt:F6GUK2	EMBL:FN594951
GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016787
GO:GO:0030246	GO:GO:0030247	GO:GO:0046658	InterPro:Glyco_hydro_17	InterPro:Glycoside_hydrolase_SF	EntrezGene:LOC100255211
wikigene:LOC100255211	PFAM:PF00332	PFAM:PF07983	PANTHER:PTHR32227	PANTHER:PTHR32227:SF232	SMART:SM00768
SUPFAM:SSF51445	SignalP:SignalP-TM	TMHMM:TMhelix	UniParc:UPI00021091D0	ArrayExpress:VIT_06s0004g00720	EnsemblPlantsGene:VIT_06s0004g00720
EnsemblPlants:VIT_06s0004g00720.t01	InterPro:X8	RefSeq:XP_002283548	RefSeq:XP_002283548.1	:	:

Description

No Description!

Coordinates

chr6:+:847782..854595

Molecular Weight (calculated)

51353.8 Da

IEP (calculated)

4.713

GRAVY (calculated)

-0.004

Length

473 amino acids

Sequence
(BLAST)

001: MMPEKWLAIV LLLLVGMFCN ALGAFVGVNI GTDVSNLPSA SVLVGILKAH QITHVRLYDA DAHMLNALAN TGIEVVVGVT NEEVLGIGQS PSTAATWINR
101: NVAAYVPSTN ITAIAVGSEV LTSIPHAAPV LVPAMNYLHK ALVASNLNFQ IKVSAPQSLD IIPRPFPPST ATFNSTWNST IYQMLQFLKN TNSYFMLNAY
201: PYYGYTNGDG IFPIDYALFR SLPSVKQIVD PNTLFHYESM LDAMVDAAYY SVQAFNFSVV PVVVTESGWP WLGGANEPDA TVENAETFNS NLIRRVLNNS
301: GPPSQPDIPI NTYIYELLNE DKRSGPVSER NWGVFLTNGT AVYPLSWSTS LQATGNSSTV FCVAKEGADS DDLEKGLNWA CGQSQVNCTA IQEGQPCYSP
401: NTYQNHASYA YNDYYQKMRS GGGTCDFRGT ATTTTADPIL IQAPVEEPLL PQHSRLKASP AGVQPCKFPD LGF

Best Arabidopsis Sequence Match ( AT3G13560.4 )
(BLAST)

001: MLLPRWFAEA LLLLLSILAC SNAAFIGVNI GTDLTNMPPP SDIVTLLKSQ QITHVRLYDA NSHMLKAFAN TSIEVMVGVT NEEILKIGRF PSAAAAWVNK
101: NVAAYIPSTN ITAIAVGSEV LTTIPHVAPI LASALNNIHK ALVASNLNFK VKVSSPMSMD IMPKPFPPST STFSPSWNTT VYQLLQFLKN TGSFFMLNAY
201: PYYGYTTANG IFPLDYALFK QLSPVKQIVD PNTLLHYNSM FDAMVDAAYY SMEALNFSKI PVVVTETGWP SSGGSDEAAA TVANAETFNT NLIKRVLNNS
301: GPPSQPDIPI NTYIYELYNE DKRSGPVSER NWGILFPNGT SVYPLSLSGG SSSAALNGSS MFCVAKADAD DDKLVDGLNW ACGQGRANCA AIQPGQPCYL
401: PNDVKSHASF AFNDYYQKMK SAGGTCDFDG TAITTTRDPS YRTCAYTGSL NANATNGNFP PDALGPASPL GGNANARIIF SYHLPILAPL ALTLLQLLLQ
501: HDRLL

Arabidopsis Description

Glucan endo-1,3-beta-glucosidase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q94CD8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.