Factsheet for VIT_18s0122g00980.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

extracellular: 30448023

msms PMID: 30448023 doi

S Belchí-Navarro, L Almagro, R Bru-Martínez, MA Pedreño

Department of Plant Biology, Faculty of Biology, University of Murcia, Campus de Espinardo, E-30100, Murcia, Spain., Department of Plant Biology, Faculty of Biology, University of Murcia, Campus de Espinardo, E-30100, Murcia, Spain. Electronic address: lorena.almagro@um.es., Plant Proteomics and Functional Genomics Group, Department of Agrochemistry and Biochemistry, Faculty of Science, University of Alicante and Instituto de Investigación Sanitaria y Biomédica de Alicante ISABIAL-FISABIO, Alicante, Spain.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037469	Potato	plasma membrane, vacuole	75.0	75.66
Solyc12g040860.1.1	Tomato	extracellular, plasma membrane, vacuole	73.7	74.34
VIT_10s0003g03690.t01	Wine grape	extracellular	36.74	45.07
VIT_06s0004g04750.t01	Wine grape	extracellular	32.61	41.67
VIT_13s0019g01180.t01	Wine grape	extracellular, vacuole	40.43	41.61
VIT_16s0098g01560.t01	Wine grape	extracellular	41.09	41.0
VIT_18s0001g12390.t01	Wine grape	extracellular, vacuole	41.09	40.65
VIT_02s0025g02770.t01	Wine grape	extracellular	35.43	40.25
VIT_12s0059g01320.t01	Wine grape	extracellular, vacuole	40.87	39.92
VIT_19s0090g01070.t01	Wine grape	extracellular, plasma membrane, vacuole	39.13	38.22
VIT_03s0063g02490.t01	Wine grape	endoplasmic reticulum, extracellular	40.65	38.16
VIT_09s0002g06880.t01	Wine grape	vacuole	33.04	38.1
VIT_11s0016g02960.t01	Wine grape	extracellular, vacuole	40.0	37.25
VIT_06s0080g00420.t01	Wine grape	extracellular, mitochondrion, plastid, vacuole	33.04	37.07
VIT_11s0016g05560.t01	Wine grape	golgi, vacuole	30.65	35.79
VIT_05s0062g01430.t01	Wine grape	extracellular, vacuole	36.09	35.55
VIT_01s0011g05500.t01	Wine grape	extracellular, plasma membrane, vacuole	38.26	35.34
VIT_14s0006g00520.t01	Wine grape	extracellular, plasma membrane, vacuole	37.17	34.62
VIT_06s0004g00720.t01	Wine grape	extracellular, vacuole	35.0	34.04
VIT_10s0116g01640.t01	Wine grape	extracellular, vacuole	34.57	28.04

Protein Annotations

KEGG:00500+3.2.1.39	EntrezGene:100252971	wikigene:100252971	Gene3D:3.20.20.80	MapMan:50.3.2	UniProt:A5BQU3
EMBL:AM467891	ProteinID:CAN72608	ProteinID:CAN72608.1	ProteinID:CCB62662	ProteinID:CCB62662.1	EMBL:FN596759
GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016787
GO:GO:0030246	GO:GO:0030247	GO:GO:0046658	InterPro:Glyco_hydro_17	InterPro:Glycoside_hydrolase_SF	EntrezGene:LOC100252971
wikigene:LOC100252971	PFAM:PF00332	PFAM:PF07983	PANTHER:PTHR32227	PANTHER:PTHR32227:SF89	SMART:SM00768
SUPFAM:SSF51445	SignalP:SignalP-noTM	TIGR:TC70339	TMHMM:TMhelix	UniParc:UPI00015216EB	ArrayExpress:VIT_18s0122g00980
EnsemblPlantsGene:VIT_18s0122g00980	EnsemblPlants:VIT_18s0122g00980.t01	unigene:Vvi.12227	unigene:Vvi.19985	unigene:Vvi.25525	InterPro:X8
RefSeq:XP_002272900	RefSeq:XP_002272900.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr18:+:694337..696186

Molecular Weight (calculated)

49539.1 Da

IEP (calculated)

6.107

GRAVY (calculated)

-0.051

Length

460 amino acids

Sequence
(BLAST)

001: MAPTSLLLLP LLLLLCLFPA VSSVGVNYGT LGNNLPPPKK VAQLLQSTLI DKVKIYDTNP EILEAFSNTG IDLIVAVENY HVSNISSDVA AADEWFATRV
101: APFIPATSIV AIAVGNEYLT TDTDHLALNA LVQAMQNLHG VLLARGLDRK IKVTTPHSMA VLASSFPPSA STFALELIPT MTSIVGFIAD TGAPFMINAY
201: PYFAYRDNPG KIDLEYALLG NTTGVRDPKG FVYNNMLDAQ IDAVRSAINA LGFGNRTIEI TVSESGWPSK GEAGDSAATP ENAKKYNTRL IERGQSDKGT
301: PMRPKDKVEV FVFALFNENK KGGGVSERNF GILNGDGSKV YEIDLSCKFC SGNGGAVGFG EKVANAARGP SVWCVAKPHA DEKVLQAVLD FCCGPGGVDC
401: REIYGSGDCF EPNKLHAHSS YAMNAYYQMH GRNYWNCDFK GAGLVTFGDP SYGRCRYPQQ

Best Arabidopsis Sequence Match ( AT5G56590.1 )
(BLAST)

001: MARDFKLIFS ISILLLLLDC CYGGKVGVCY GRSADDLPTP SKVVQLIQQH NIKYVRIYDY NSQVLKAFGN TSIELMIGVP NSDLNAFSQS QSNVDTWLKN
101: SVLPYYPTTK ITYITVGAES TDDPHINASS FVVPAMQNVL TALRKVGLSR RIKVSTTLSL GILSRSFPPS AGAFNSSYAY FLRPMLEFLA ENKSPFMIDL
201: YPYYAYRDSP NNVSLDYVLF ESSSEVIDPN TGLLYKNMFD AQVDALYYAL TALNFRTIKI MVTETGWPTK GSPKEKAAAS SDNAETYNSN IIRHVVTNQG
301: TPAKPGEAMN VYIFSLFNEN RKAGLDSERN WGLFYPDQTS VYQLDFTGKS NGFHSNSSGT NSSGSSNSWC IASSKASERD LKGALDWACG PGNVDCTAIQ
401: PSQPCFQPDT LVSHASFVFN SYFQQNRATD VACSFGGAGV KVNKDPSYDK CIYITAGGNK TKATNATALT SSASTPRGNE LLQWILKLCL MISLFFSLQT
501: MNSQAL

Arabidopsis Description

Glucan endo-1,3-beta-glucosidase 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJU9]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.