Factsheet for Solyc12g040860.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, plasma membrane, vacuole

Predictor Summary:

extracellular 6
golgi 5
plasma membrane 7
endoplasmic reticulum 5
vacuole 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane, vacuole
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037469	Potato	plasma membrane, vacuole	94.3	94.3
VIT_18s0122g00980.t01	Wine grape	extracellular	74.34	73.7
Solyc11g068440.1.1	Tomato	extracellular	33.99	40.79
Solyc06g076170.2.1	Tomato	extracellular	39.47	40.09
Solyc02g070450.1.1	Tomato	endoplasmic reticulum, extracellular, vacuole	34.43	39.35
Solyc03g082900.2.1	Tomato	extracellular	32.24	38.89
Solyc11g071520.1.1	Tomato	extracellular	31.8	37.86
Solyc12g014420.1.1	Tomato	extracellular	39.47	37.5
Solyc07g049370.2.1	Tomato	extracellular, vacuole	38.16	37.18
Solyc12g008580.1.1	Tomato	extracellular	40.35	37.1
Solyc08g083310.2.1	Tomato	nucleus	34.21	36.88
Solyc07g005330.2.1	Tomato	extracellular	37.06	36.82
Solyc01g109570.2.1	Tomato	extracellular	37.72	36.36
Solyc07g008150.2.1	Tomato	extracellular, vacuole	30.92	36.15
Solyc09g057630.2.1	Tomato	nucleus	36.18	35.56
Solyc12g055840.1.1	Tomato	nucleus	32.68	35.31
Solyc12g098560.1.1	Tomato	extracellular	34.21	33.99
Solyc04g007910.2.1	Tomato	extracellular	37.5	33.86
Solyc05g054440.2.1	Tomato	unclear	39.04	33.84
Solyc06g073710.2.1	Tomato	golgi, mitochondrion, plastid, vacuole	29.82	33.01
Solyc08g005000.2.1	Tomato	extracellular	31.14	32.42
Solyc04g080260.2.1	Tomato	extracellular	31.14	32.2
Solyc02g080660.2.1	Tomato	golgi, plasma membrane, vacuole	25.44	28.09

Protein Annotations

KEGG:00500+3.2.1.39	Gene3D:3.20.20.80	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0005488	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0016020	GO:GO:0016787	GO:GO:0016798	GO:GO:0030246	GO:GO:0030247
GO:GO:0046658	InterPro:Glyco_hydro_17	InterPro:Glycoside_hydrolase_SF	UniProt:K4DEY0	PFAM:PF00332	PFAM:PF07983
ScanProsite:PS00587	PANTHER:PTHR32227	PANTHER:PTHR32227:SF89	SMART:SM00768	SUPFAM:SSF51445	SignalP:SignalP-noTM
EnsemblPlantsGene:Solyc12g040860.1	EnsemblPlants:Solyc12g040860.1.1	TMHMM:TMhelix	UniParc:UPI000276A806	InterPro:X8	SEG:seg

Description

No Description!

Coordinates

chr12:+:42471352..42473189

Molecular Weight (calculated)

50392.8 Da

IEP (calculated)

6.415

GRAVY (calculated)

-0.134

Length

456 amino acids

Sequence
(BLAST)

001: MSLFCTLVLS LFILLSLINY NVHGVGINYG TIGNNLPSPK KVAQLLQSTI FDKVKIYDTN PEILEAFSNT GIDLIVAVEN SQIKNLSENQ SNADKWFVTR
101: ILPFIPSTSI VTIAVGNEYL TDDQLLDHNA LFQAMQNLHS VLLSRGLNRK IKVSTPHSMA VLASSFPPSS STFATTLLPV MTSIVALLSD TNSPFMINAY
201: PYFAYRDNPS MVNLEYALLG NTSGVRDPKG YVYTNMLDAQ IDAIRSAINA LGFGNQTIQI LVSESGWPSR GDTSATNENA RTYNTRLIQR AQLNKGTPMS
301: PKDRIDVFVF ALFNENKKQG GVSERNFGIF NGDGTKVYDV DLSCEFCSNE KFGGKIESSL LSSRGPSVWC VAKPHADEKV IQAVLDFCCG PGGVDCREIH
401: ENGDCFQPDK VYAHTSYAMN AYYQMHGRNY WNCDFKGTGL VTFSDPSYGK CFYSHQ

Best Arabidopsis Sequence Match ( AT5G56590.1 )
(BLAST)

001: MARDFKLIFS ISILLLLLDC CYGGKVGVCY GRSADDLPTP SKVVQLIQQH NIKYVRIYDY NSQVLKAFGN TSIELMIGVP NSDLNAFSQS QSNVDTWLKN
101: SVLPYYPTTK ITYITVGAES TDDPHINASS FVVPAMQNVL TALRKVGLSR RIKVSTTLSL GILSRSFPPS AGAFNSSYAY FLRPMLEFLA ENKSPFMIDL
201: YPYYAYRDSP NNVSLDYVLF ESSSEVIDPN TGLLYKNMFD AQVDALYYAL TALNFRTIKI MVTETGWPTK GSPKEKAAAS SDNAETYNSN IIRHVVTNQG
301: TPAKPGEAMN VYIFSLFNEN RKAGLDSERN WGLFYPDQTS VYQLDFTGKS NGFHSNSSGT NSSGSSNSWC IASSKASERD LKGALDWACG PGNVDCTAIQ
401: PSQPCFQPDT LVSHASFVFN SYFQQNRATD VACSFGGAGV KVNKDPSYDK CIYITAGGNK TKATNATALT SSASTPRGNE LLQWILKLCL MISLFFSLQT
501: MNSQAL

Arabidopsis Description

Glucan endo-1,3-beta-glucosidase 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJU9]
SUBAcon: [extracellular,plasma membrane,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.