Factsheet for Solyc04g007910.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 7
vacuole 5
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	extracellular

extracellular: 26583031
extracellular: 29876421

msms PMID: 26583031 doi

F Gawehns, L Ma, O Bruning, PM Houterman, S Boeren, BJ Cornelissen, M Rep, FL Takken

Laboratory of Biochemistry, Wageningen University Wageningen, Netherlands., Molecular Plant Pathology, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands., RNA Biology and Applied Bioinformatics Research Group and MAD: Dutch Genomics Service and Support Provider, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400075818	Potato	extracellular	96.24	96.24
VIT_01s0011g05500.t01	Wine grape	extracellular, plasma membrane, vacuole	77.03	78.11
KRH41666	Soybean	plasma membrane	73.47	74.35
KRH70129	Soybean	cytosol	70.69	72.86
KRH08471	Soybean	extracellular	70.89	72.18
Os03t0221500-01	Rice	extracellular, plasma membrane, vacuole	69.11	69.25
Zm00001d048055_P001	Maize	plasma membrane	68.12	68.66
EER95256	Sorghum	extracellular, plasma membrane, vacuole	68.12	68.53
Zm00001d028243_P001	Maize	plasma membrane	67.92	68.33
TraesCS4D01G241900.1	Wheat	extracellular	66.34	67.0
GSMUA_Achr11P...	Banana	extracellular, plasma membrane, vacuole	68.71	66.86
TraesCS4B01G242300.1	Wheat	extracellular	66.14	66.8
Solyc08g005000.2.1	Tomato	extracellular	57.82	66.67
KRH60366	Soybean	extracellular	74.06	64.82
TraesCS4A01G064900.2	Wheat	extracellular, plasma membrane, vacuole	66.93	64.02
HORVU4Hr1G067180.3	Barley	extracellular, vacuole	63.56	63.69
GSMUA_Achr2P21600_001	Banana	mitochondrion, nucleus, plasma membrane	69.5	51.02
Solyc02g080660.2.1	Tomato	golgi, plasma membrane, vacuole	40.79	49.88
Solyc03g082900.2.1	Tomato	extracellular	28.91	38.62
Solyc07g049370.2.1	Tomato	extracellular, vacuole	35.45	38.25
Solyc12g008580.1.1	Tomato	extracellular	37.03	37.7
Solyc12g040860.1.1	Tomato	extracellular, plasma membrane, vacuole	33.86	37.5
Solyc06g076170.2.1	Tomato	extracellular	33.07	37.19
Solyc12g014420.1.1	Tomato	extracellular	34.46	36.25
Solyc01g109570.2.1	Tomato	extracellular	32.48	34.67
Solyc07g005330.2.1	Tomato	extracellular	30.89	33.99
Solyc02g070450.1.1	Tomato	endoplasmic reticulum, extracellular, vacuole	26.73	33.83
Solyc07g008150.2.1	Tomato	extracellular, vacuole	25.94	33.59
Solyc11g071520.1.1	Tomato	extracellular	25.15	33.16
Solyc12g098560.1.1	Tomato	extracellular	29.9	32.9
Solyc12g055840.1.1	Tomato	nucleus	27.13	32.46
Solyc09g057630.2.1	Tomato	nucleus	29.5	32.11
Solyc11g068440.1.1	Tomato	extracellular	24.16	32.11
Solyc08g083310.2.1	Tomato	nucleus	26.53	31.68
Solyc06g073710.2.1	Tomato	golgi, mitochondrion, plastid, vacuole	25.35	31.07
Solyc05g054440.2.1	Tomato	unclear	31.68	30.42
Solyc04g080260.2.1	Tomato	extracellular	25.15	28.8

Protein Annotations

KEGG:00500+3.2.1.39	Gene3D:3.20.20.80	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0005488	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0016020	GO:GO:0016787	GO:GO:0016798	GO:GO:0030246	GO:GO:0030247
GO:GO:0046658	InterPro:Glyco_hydro_17	InterPro:Glycoside_hydrolase_SF	UniProt:K4BNU8	PFAM:PF00332	PFAM:PF07983
ScanProsite:PS00587	PANTHER:PTHR32227	PANTHER:PTHR32227:SF147	SMART:SM00768	SUPFAM:SSF51445	SignalP:SignalP-noTM
EnsemblPlantsGene:Solyc04g007910.2	EnsemblPlants:Solyc04g007910.2.1	TMHMM:TMhelix	UniParc:UPI0002766BBA	InterPro:X8	SEG:seg

Description

No Description!

Coordinates

chr4:-:1574818..1580749

Molecular Weight (calculated)

54641.8 Da

IEP (calculated)

5.458

GRAVY (calculated)

0.055

Length

505 amino acids

Sequence
(BLAST)

001: MKSSMDFLVL LLLISHLVAF AFSANEDAFV GVNIGTDVSD MPSPAQVVAL LKAQQIRHVR LFDADQAMLL ALAHTEIRVI VSVPNDQLLG IGQSNSTAAN
101: WVSRNILSHV PATNITAIAI GSEVLTTLPN AAPLLVSAMK FIHSALVAAN LDTKIKVSTP HSSFIILDSF PPSQAFFNRS LDPVMVPLLK FLQDTDSYFM
201: LNVYPYYDYM KSNGVIALDY ALFRPLPPNK EAVDSNTLLH YTNVFDAVVD AAYFSMSYLN FTNIPVMVTE SGWPSKADSS EPDATLDNAN TYNSNLIRHV
301: LNNTGTPKHP GIAVSTYIYE LYNEDLRPGS ISEKNWGLFD SNGVPVYIMH LTGSGTVLTN DTTNQTYCVA KENADKKMVQ AALDWACGPG KVDCTPLLQE
401: NPCYDPNTVF AHASYAFDAY YHKMGMADGT CNFNGVAKVT TTDPSHGSCI YPGSGGRNGT FTNSSSVAPS SDSASGCHSQ YSHDVHTLSR SLIVGLLTLL
501: TAASL

Best Arabidopsis Sequence Match ( AT2G01630.1 )
(BLAST)

001: MAALLLLFLF LFASSALSQD SLIGVNIGTE VTNMPSPTQV VALLKSQNIN RVRLYDADRS MLLAFAHTGV QVIISVPNDQ LLGISQSNAT AANWVTRNVA
101: AYYPATNITT IAVGSEVLTS LTNAASVLVS ALKYIQAALV TANLDRQIKV STPHSSTIIL DSFPPSQAFF NKTWDPVIVP LLKFLQSTGS PLLLNVYPYF
201: DYVQSNGVIP LDYALFQPLQ ANKEAVDANT LLHYTNVFDA IVDAAYFAMS YLNFTNIPIV VTESGWPSKG GPSEHDATVE NANTYNSNLI QHVINKTGTP
301: KHPGTAVTTY IYELYNEDTR PGPVSEKNWG LFYTNGTPVY TLRLAGAGAI LANDTTNQTF CIAKEKVDRK MLQAALDWAC GPGKVDCSAL MQGESCYEPD
401: DVVAHSTYAF NAYYQKMGKA SGSCDFKGVA TVTTTDPSRG TCVFPGSAKS NQTLGNNTSA LAPSANSTTS GCIPKYYHHP HASFGDLTLL SLLLIIALVF
501: L

Arabidopsis Description

Glucan endo-1,3-beta-glucosidase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU91]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.