Factsheet for Solyc01g109570.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

vacuole 6
extracellular 6
endoplasmic reticulum 4
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

extracellular: 22364583
extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001908	Potato	extracellular	97.89	98.51
VIT_03s0063g02490.t01	Wine grape	endoplasmic reticulum, extracellular	74.0	71.43
KRH51533	Soybean	endoplasmic reticulum, extracellular, vacuole	68.71	70.81
KRH60849	Soybean	endoplasmic reticulum, extracellular, vacuole	68.5	70.59
KRH24481	Soybean	cytosol	49.89	65.56
Solyc04g080260.2.1	Tomato	extracellular	59.41	63.72
GSMUA_Achr7P08120_001	Banana	plastid	41.86	61.49
CDX75437	Canola	extracellular, plasma membrane, vacuole	65.54	61.26
GSMUA_Achr6P31650_001	Banana	extracellular, vacuole	59.41	61.22
CDX69064	Canola	extracellular, plasma membrane, vacuole	65.33	61.19
Bra011537.1-P	Field mustard	extracellular, plasma membrane, vacuole	65.33	61.07
Bra039852.1-P	Field mustard	vacuole	59.2	60.09
AT4G34480.1	Thale cress	extracellular, plasma membrane, vacuole	63.85	59.92
AT2G16230.1	Thale cress	vacuole	61.52	57.85
Os03t0669300-02	Rice	endoplasmic reticulum	56.45	57.54
GSMUA_Achr7P26810_001	Banana	plastid	35.94	57.43
TraesCS4B01G020100.1	Wheat	extracellular	55.81	57.02
TraesCS4A01G293500.1	Wheat	plasma membrane	55.6	56.2
CDY26761	Canola	vacuole	60.47	55.86
CDY37244	Canola	vacuole	60.25	55.66
Bra017659.1-P	Field mustard	vacuole	65.12	55.6
TraesCS4D01G018300.1	Wheat	plasma membrane, vacuole	54.97	55.2
Zm00001d013573_P001	Maize	extracellular, plasma membrane, vacuole	53.91	55.08
Os03t0227400-01	Rice	plasma membrane	42.49	55.07
KXG37872	Sorghum	endoplasmic reticulum, extracellular, vacuole	55.18	54.95
HORVU4Hr1G008950.1	Barley	vacuole	43.97	49.88
EER95211	Sorghum	extracellular, vacuole	45.03	49.31
HORVU4Hr1G065340.1	Barley	extracellular, vacuole	44.61	48.96
HORVU4Hr1G003090.3	Barley	extracellular, vacuole	55.39	48.88
TraesCS4A01G260900.2	Wheat	extracellular, plasma membrane, vacuole	43.13	48.8
TraesCS4B01G053700.2	Wheat	vacuole	43.13	48.8
TraesCS4A01G077800.1	Wheat	vacuole	44.82	48.74
TraesCS4D01G053700.1	Wheat	vacuole	43.55	48.7
Zm00001d013390_P001	Maize	extracellular	45.45	48.64
TraesCS4D01G235000.1	Wheat	plasma membrane, vacuole	44.82	48.4
EER93548	Sorghum	vacuole	45.45	48.31
Solyc06g076170.2.1	Tomato	extracellular	45.67	48.11
Os03t0722500-01	Rice	extracellular, plasma membrane, vacuole	44.19	46.65
GSMUA_Achr3P30520_001	Banana	cytosol, plastid, vacuole	45.03	46.61
TraesCS4B01G233900.2	Wheat	plasma membrane, plastid, vacuole	43.97	45.12
Solyc03g082900.2.1	Tomato	extracellular	35.31	44.18
Zm00001d028331_P001	Maize	plastid	44.4	40.38
Solyc07g005330.2.1	Tomato	extracellular	38.69	39.87
Solyc11g068440.1.1	Tomato	extracellular	31.92	39.74
Solyc12g055840.1.1	Tomato	nucleus	34.25	38.39
Solyc07g049370.2.1	Tomato	extracellular, vacuole	37.84	38.25
Solyc12g040860.1.1	Tomato	extracellular, plasma membrane, vacuole	36.36	37.72
Solyc12g014420.1.1	Tomato	extracellular	37.84	37.29
Solyc12g008580.1.1	Tomato	extracellular	38.48	36.69
Solyc08g083310.2.1	Tomato	nucleus	32.56	36.41
Solyc11g071520.1.1	Tomato	extracellular	28.75	35.51
Solyc07g008150.2.1	Tomato	extracellular, vacuole	29.18	35.38
Solyc05g054440.2.1	Tomato	unclear	39.11	35.17
Solyc02g070450.1.1	Tomato	endoplasmic reticulum, extracellular, vacuole	29.6	35.09
Solyc08g005000.2.1	Tomato	extracellular	30.44	32.88
Solyc06g073710.2.1	Tomato	golgi, mitochondrion, plastid, vacuole	28.54	32.77
Solyc04g007910.2.1	Tomato	extracellular	34.67	32.48
Solyc12g098560.1.1	Tomato	extracellular	31.5	32.46
Solyc09g057630.2.1	Tomato	nucleus	31.08	31.68
Solyc02g080660.2.1	Tomato	golgi, plasma membrane, vacuole	25.37	29.06

Protein Annotations

KEGG:00500+3.2.1.39	Gene3D:3.20.20.80	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0005488	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0016020	GO:GO:0016787	GO:GO:0030246	GO:GO:0030247	GO:GO:0046658
InterPro:Glyco_hydro_17	InterPro:Glycoside_hydrolase_SF	UniProt:K4B3H0	PFAM:PF00332	PFAM:PF07983	PANTHER:PTHR32227
PANTHER:PTHR32227:SF228	SMART:SM00768	SUPFAM:SSF51445	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc01g109570.2	EnsemblPlants:Solyc01g109570.2.1
UniParc:UPI00027689D9	InterPro:X8	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:-:96476757..96482117

Molecular Weight (calculated)

50307.7 Da

IEP (calculated)

4.758

GRAVY (calculated)

-0.079

Length

473 amino acids

Sequence
(BLAST)

001: MDPQKLSSFF LIFFVLLQSL SSADSQAFIG VNYGQVADNL PPPAETVKLI QSTSIQKVRL YGADPAIIKA LANTGIGIVI GASNGDIPAL AADPNFAGQW
101: VHNNILAYYP ASKIIVVNVG NEVVTSGDQN LIPKLLPAMQ NVQNALNAAS LGGRIKVSTV HAMSILSQSD PPSSGLFSPV FGDTLKALLQ FHKDNGSPLM
201: INPYPFFAYQ SDPRPETLAF CLFQPNAGRV DSGNGIKYMN MFDAQVDAVR SALNAWGFKE IQIVVAETGW PYKGDPNEVG PSMDNAKAYN GNLINHLRSM
301: VGTPLMPGIS VDTYIFALYD EDLKPGPGSE RSFGLFKPDL STTYDAGLSK NSQAPTAPVT PAPVTPTTPI TPVTPAPKPT GSATWCLPKP GIPDSELQSN
401: LDYACSMGID CSPIQEGGPC FEPNTVASHA AYAMNVLYQT AGRNPWNCDF SQTASLTSTN PSYNGCTYPG GNL

Best Arabidopsis Sequence Match ( AT4G34480.1 )
(BLAST)

001: MALSISIYFL LIFLSHFPSS HAEPFIGVNY GQVADNLPPP SETVKLLQST SIQKVRLYGA DPAIIKALAG TGVGIVIGAA NGDVPSLASD PNAATQWINS
101: NVLPFYPASK IMLITVGNEI LMSNDPNLVN QLLPAMQNVQ KALEAVSLGG KIKVSTVNSM TVLGSSDPPS SGSFAAGYQT GLKGILQFLS DTGSPFAINP
201: YPFFAYQSDP RPETLAFCLF EPNAGRVDSK TGIKYTNMFD AQVDAVHSAL KSMGFEKVEI VVAETGWASR GDANEVGASV DNAKAYNGNL IAHLRSMVGT
301: PLMPGKPVDT YIFALYDENL KPGPSSERAF GLFKTDLSMV YDVGLAKSSS SSQTPSGKVT SSGWCVPKKG ATNEELQASL DWACGHGIDC GAIQPGGACF
401: EPNNVVSHAA YAMNMYFQKS PKQPTDCDFS KTATVTSQNP SYNNCVYPGG GGGGGGGGGG SKAVMNKYVS SDKVEKKNGA TEPKVSSSLS FLLIFLSLIF
501: HVYM

Arabidopsis Description

Glucan endo-1,3-beta-glucosidase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9M069]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.