Factsheet for Solyc12g008580.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

extracellular: 26583031
extracellular: 29876421

msms PMID: 26583031 doi

F Gawehns, L Ma, O Bruning, PM Houterman, S Boeren, BJ Cornelissen, M Rep, FL Takken

Laboratory of Biochemistry, Wageningen University Wageningen, Netherlands., Molecular Plant Pathology, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands., RNA Biology and Applied Bioinformatics Research Group and MAD: Dutch Genomics Service and Support Provider, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400000943	Potato	extracellular, vacuole	97.58	97.58
VIT_11s0016g02960.t01	Wine grape	extracellular, vacuole	77.42	77.73
KRH41480	Soybean	extracellular, plasma membrane, vacuole	75.81	75.5
KRH60198	Soybean	extracellular, plasma membrane, vacuole	75.4	74.95
HORVU3Hr1G070400.1	Barley	extracellular, vacuole	65.12	70.52
CDY64970	Canola	extracellular, plasma membrane, vacuole	70.77	69.78
Bra002805.1-P	Field mustard	nucleus, plastid, vacuole	69.15	69.72
CDY32869	Canola	endoplasmic reticulum, extracellular, plasma membrane	70.16	69.18
Os01t0739700-01	Rice	plasma membrane	68.75	69.17
AT5G56590.1	Thale cress	extracellular, plasma membrane, vacuole	69.96	68.58
Zm00001d043524_P001	Maize	plasma membrane	67.74	67.74
TraesCS3A01G277100.2	Wheat	vacuole	67.34	67.61
GSMUA_Achr4P02650_001	Banana	extracellular, vacuole	58.27	67.05
EES01451	Sorghum	extracellular, plasma membrane, vacuole	66.94	66.8
TraesCS3D01G277300.4	Wheat	vacuole	67.74	63.4
TraesCS3B01G311300.2	Wheat	vacuole	67.54	63.09
HORVU3Hr1G070440.12	Barley	plastid	65.73	62.69
Solyc06g076170.2.1	Tomato	extracellular	37.1	40.98
Solyc12g040860.1.1	Tomato	extracellular, plasma membrane, vacuole	37.1	40.35
Solyc11g068440.1.1	Tomato	extracellular	30.04	39.21
Solyc01g109570.2.1	Tomato	extracellular	36.69	38.48
Solyc02g070450.1.1	Tomato	endoplasmic reticulum, extracellular, vacuole	30.85	38.35
Solyc12g014420.1.1	Tomato	extracellular	37.1	38.33
Solyc03g082900.2.1	Tomato	extracellular	29.03	38.1
Solyc07g049370.2.1	Tomato	extracellular, vacuole	35.69	37.82
Solyc11g071520.1.1	Tomato	extracellular	28.83	37.34
Solyc04g007910.2.1	Tomato	extracellular	37.7	37.03
Solyc07g005330.2.1	Tomato	extracellular	34.07	36.82
Solyc07g008150.2.1	Tomato	extracellular, vacuole	28.63	36.41
Solyc09g057630.2.1	Tomato	nucleus	33.87	36.21
Solyc08g005000.2.1	Tomato	extracellular	31.85	36.07
Solyc06g073710.2.1	Tomato	golgi, mitochondrion, plastid, vacuole	29.64	35.68
Solyc12g055840.1.1	Tomato	nucleus	29.03	34.12
Solyc04g080260.2.1	Tomato	extracellular	30.24	34.01
Solyc08g083310.2.1	Tomato	nucleus	28.43	33.33
Solyc02g080660.2.1	Tomato	golgi, plasma membrane, vacuole	27.42	32.93
Solyc12g098560.1.1	Tomato	extracellular	30.04	32.46
Solyc05g054440.2.1	Tomato	unclear	33.47	31.56

Protein Annotations

KEGG:00500+3.2.1.39	Gene3D:3.20.20.80	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0005488	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0016020	GO:GO:0016787	GO:GO:0016798	GO:GO:0030246	GO:GO:0030247
GO:GO:0046658	InterPro:Glyco_hydro_17	InterPro:Glycoside_hydrolase_SF	UniProt:K4DBU6	PFAM:PF00332	PFAM:PF07983
ScanProsite:PS00587	PANTHER:PTHR32227	PANTHER:PTHR32227:SF88	SMART:SM00768	SUPFAM:SSF51445	SignalP:SignalP-noTM
EnsemblPlantsGene:Solyc12g008580.1	EnsemblPlants:Solyc12g008580.1.1	UniParc:UPI0002769571	InterPro:X8	SEG:seg	:

Description

No Description!

Coordinates

chr12:+:1968665..1973480

Molecular Weight (calculated)

53955.6 Da

IEP (calculated)

6.250

GRAVY (calculated)

-0.073

Length

496 amino acids

Sequence
(BLAST)

001: MARGFSIIFA ATVLLVILGI CRASRVGICY GRNADDLPTP EKAVQLIQMH NIKYVRIYDS NIQVLKAFAN TGIELMIGVP NSDLLAFSQF ESNANTWLKN
101: SILPYYPDTK ITSITVGAEL TEAPNTTAAL VVPAMQNVFT ALKKAGLHRR IKVSSTHSLG VLSRSFPPSA GAFNSSHAFF LKPMLEFLAE NQSPFMIDLY
201: PYYAYRDSST NVSLDYALFE ASSEVIDPNT GLLYTNMFDA QLDAINYALM ALNFKTVNIM VTETGWPSKG SPKETAATPD NAQTYNTNLI RHVINNTGTP
301: AKPGGAVDVY VFSLFNENRK PGLESERNWG LFFPDQTSVY NLDFTGKGVV DTTAGGNNTG SNGTWCIASS SASEAELQNA LSWACGSGNV DCSAIQPSQP
401: CFEPDNLASH ASFAFNSYYQ QNGATDIACT FGGVGVRTNK NPSYDNCLYA TTGGKKAIFN NATVGPSKST SSSPQRSYWW TQYLLVAFPL FFLVPF

Best Arabidopsis Sequence Match ( AT5G56590.1 )
(BLAST)

001: MARDFKLIFS ISILLLLLDC CYGGKVGVCY GRSADDLPTP SKVVQLIQQH NIKYVRIYDY NSQVLKAFGN TSIELMIGVP NSDLNAFSQS QSNVDTWLKN
101: SVLPYYPTTK ITYITVGAES TDDPHINASS FVVPAMQNVL TALRKVGLSR RIKVSTTLSL GILSRSFPPS AGAFNSSYAY FLRPMLEFLA ENKSPFMIDL
201: YPYYAYRDSP NNVSLDYVLF ESSSEVIDPN TGLLYKNMFD AQVDALYYAL TALNFRTIKI MVTETGWPTK GSPKEKAAAS SDNAETYNSN IIRHVVTNQG
301: TPAKPGEAMN VYIFSLFNEN RKAGLDSERN WGLFYPDQTS VYQLDFTGKS NGFHSNSSGT NSSGSSNSWC IASSKASERD LKGALDWACG PGNVDCTAIQ
401: PSQPCFQPDT LVSHASFVFN SYFQQNRATD VACSFGGAGV KVNKDPSYDK CIYITAGGNK TKATNATALT SSASTPRGNE LLQWILKLCL MISLFFSLQT
501: MNSQAL

Arabidopsis Description

Glucan endo-1,3-beta-glucosidase 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJU9]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.