Factsheet for PGSC0003DMT400000943

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g008580.1.1	Tomato	extracellular	97.58	97.58
VIT_11s0016g02960.t01	Wine grape	extracellular, vacuole	77.62	77.94
KRH41480	Soybean	extracellular, plasma membrane, vacuole	76.61	76.31
KRH60198	Soybean	extracellular, plasma membrane, vacuole	76.21	75.75
HORVU3Hr1G070400.1	Barley	extracellular, vacuole	65.12	70.52
CDY64970	Canola	extracellular, plasma membrane, vacuole	70.56	69.58
Bra002805.1-P	Field mustard	nucleus, plastid, vacuole	68.75	69.31
Os01t0739700-01	Rice	plasma membrane	68.75	69.17
CDY32869	Canola	endoplasmic reticulum, extracellular, plasma membrane	69.96	68.99
AT5G56590.1	Thale cress	extracellular, plasma membrane, vacuole	69.76	68.38
TraesCS3A01G277100.2	Wheat	vacuole	67.14	67.41
Zm00001d043524_P001	Maize	plasma membrane	67.34	67.34
GSMUA_Achr4P02650_001	Banana	extracellular, vacuole	58.47	67.29
EES01451	Sorghum	extracellular, plasma membrane, vacuole	66.94	66.8
TraesCS3D01G277300.4	Wheat	vacuole	67.74	63.4
TraesCS3B01G311300.2	Wheat	vacuole	67.54	63.09
HORVU3Hr1G070440.12	Barley	plastid	65.73	62.69
PGSC0003DMT400078179	Potato	extracellular	36.69	40.62
PGSC0003DMT400037469	Potato	plasma membrane, vacuole	37.1	40.35
PGSC0003DMT400067771	Potato	extracellular, plasma membrane, vacuole	30.24	39.16
PGSC0003DMT400001908	Potato	extracellular	37.1	39.15
PGSC0003DMT400015234	Potato	cytosol, peroxisome, plastid	28.83	38.54
PGSC0003DMT400033482	Potato	extracellular, vacuole	36.69	38.4
PGSC0003DMT400047660	Potato	extracellular	29.44	38.22
PGSC0003DMT400048136	Potato	cytosol, plastid, vacuole	27.42	38.2
PGSC0003DMT400001833	Potato	extracellular, vacuole	35.28	37.39
PGSC0003DMT400075818	Potato	extracellular	37.5	36.83
PGSC0003DMT400033484	Potato	extracellular, vacuole	29.44	36.59
PGSC0003DMT400008245	Potato	vacuole	33.27	35.71
PGSC0003DMT400079432	Potato	extracellular, vacuole	28.02	35.64
PGSC0003DMT400012898	Potato	cytosol	29.44	35.52
PGSC0003DMT400022520	Potato	extracellular, vacuole	32.86	35.13
PGSC0003DMT400031570	Potato	extracellular, vacuole	28.63	34.13
PGSC0003DMT400013154	Potato	extracellular, vacuole	30.04	33.79
PGSC0003DMT400042484	Potato	extracellular, plasma membrane, vacuole	35.28	33.4
PGSC0003DMT400081837	Potato	extracellular	33.27	33.13
PGSC0003DMT400060499	Potato	extracellular	32.86	32.34
PGSC0003DMT400040463	Potato	mitochondrion, vacuole	34.88	30.62

Protein Annotations

KEGG:00500+3.2.1.39	EntrezGene:102578898	Gene3D:3.20.20.80	MapMan:50.3.2	ProteinID:AFU52637	ProteinID:AFU52637.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0016787	GO:GO:0016798	InterPro:Glyco_hydro_17	InterPro:Glycoside_hydrolase_SF	EMBL:JX838856	UniProt:K9MBD0
RefSeq:NP_001275363.1	PFAM:PF00332	PFAM:PF07983	EnsemblPlantsGene:PGSC0003DMG400000354	PGSC:PGSC0003DMG400000354	EnsemblPlants:PGSC0003DMT400000943
ScanProsite:PS00587	PANTHER:PTHR32227	PANTHER:PTHR32227:SF88	SMART:SM00768	SUPFAM:SSF51445	SignalP:SignalP-noTM
UniParc:UPI0002959C7F	InterPro:X8	SEG:seg	:	:	:

Description

Glucan endo-1,3-beta-glucosidase [Source:PGSC_GENE;Acc:PGSC0003DMG400000354]

Coordinates

chr12:-:3979281..3984428

Molecular Weight (calculated)

53949.7 Da

IEP (calculated)

6.617

GRAVY (calculated)

-0.062

Length

496 amino acids

Sequence
(BLAST)

001: MARGFSIIFA ASVLLVILGI CRASRVGICY GRNADDLPTP EKAVQLIQMH NIKYVRIYDS NIQVLKAFAN TGIELMIGIP NSDLLAFSQF ESNANTWLKN
101: SILPYYPATK ITYITVGAEL TEAPNTTAAL VVPAMQNVFT ALKKAGLHRR IKVSSTHSLG VLSRSFPPSA GAFNSSHASF LKPMLEFLAE NQSPFMIDLY
201: PYYAYRDSST NVSLDYALFE ASSEVIDPNT GLLYTNMFDA QLDAINYALM ALNFKTVNIM VTETGWPSKG SPKETAATPD NAQTYNTNLI RHVINNTGTP
301: AKPGGAVDVY VFSLFNENRK PGLESERNWG LFFPDQTSVY NLDFTGKGVV DMTAGGNNTG SNGTWCIASS SASEAELQNA LSWACGSGNV DCSAIQPSQP
401: CFEPDNFASH ASFAFNSYYQ QNGATDIACT FGGVGVRTNK NPSYDNCLYA TTGGKKAIVN NTTVGPSKSS SSSPQRSYWW TQHLLVAFPL FFLVLF

Best Arabidopsis Sequence Match ( AT5G56590.1 )
(BLAST)

001: MARDFKLIFS ISILLLLLDC CYGGKVGVCY GRSADDLPTP SKVVQLIQQH NIKYVRIYDY NSQVLKAFGN TSIELMIGVP NSDLNAFSQS QSNVDTWLKN
101: SVLPYYPTTK ITYITVGAES TDDPHINASS FVVPAMQNVL TALRKVGLSR RIKVSTTLSL GILSRSFPPS AGAFNSSYAY FLRPMLEFLA ENKSPFMIDL
201: YPYYAYRDSP NNVSLDYVLF ESSSEVIDPN TGLLYKNMFD AQVDALYYAL TALNFRTIKI MVTETGWPTK GSPKEKAAAS SDNAETYNSN IIRHVVTNQG
301: TPAKPGEAMN VYIFSLFNEN RKAGLDSERN WGLFYPDQTS VYQLDFTGKS NGFHSNSSGT NSSGSSNSWC IASSKASERD LKGALDWACG PGNVDCTAIQ
401: PSQPCFQPDT LVSHASFVFN SYFQQNRATD VACSFGGAGV KVNKDPSYDK CIYITAGGNK TKATNATALT SSASTPRGNE LLQWILKLCL MISLFFSLQT
501: MNSQAL

Arabidopsis Description

Glucan endo-1,3-beta-glucosidase 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJU9]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.