Factsheet for PGSC0003DMT400078179

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 6
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	extracellular

extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g076170.2.1	Tomato	extracellular	95.09	94.88
PGSC0003DMT400047660	Potato	extracellular	44.64	52.36
PGSC0003DMT400008245	Potato	vacuole	51.56	50.0
PGSC0003DMT400001908	Potato	extracellular	47.1	44.89
PGSC0003DMT400060499	Potato	extracellular	50.45	44.84
PGSC0003DMT400067771	Potato	extracellular, plasma membrane, vacuole	34.6	40.47
PGSC0003DMT400037469	Potato	plasma membrane, vacuole	39.73	39.04
PGSC0003DMT400013154	Potato	extracellular, vacuole	37.72	38.32
PGSC0003DMT400048136	Potato	cytosol, plastid, vacuole	30.36	38.2
PGSC0003DMT400001833	Potato	extracellular, vacuole	39.06	37.39
PGSC0003DMT400033484	Potato	extracellular, vacuole	32.81	36.84
PGSC0003DMT400033482	Potato	extracellular, vacuole	38.84	36.71
PGSC0003DMT400000943	Potato	extracellular, vacuole	40.62	36.69
PGSC0003DMT400031570	Potato	extracellular, vacuole	32.59	35.1
PGSC0003DMT400012898	Potato	cytosol	32.14	35.04
PGSC0003DMT400022520	Potato	extracellular, vacuole	36.16	34.91
PGSC0003DMT400075818	Potato	extracellular	38.17	33.86
PGSC0003DMT400079432	Potato	extracellular, vacuole	29.46	33.85
PGSC0003DMT400015234	Potato	cytosol, peroxisome, plastid	27.68	33.42
PGSC0003DMT400042484	Potato	extracellular, plasma membrane, vacuole	35.04	29.96
PGSC0003DMT400081837	Potato	extracellular	32.59	29.32
PGSC0003DMT400040463	Potato	mitochondrion, vacuole	33.93	26.9

Protein Annotations

KEGG:00500+3.2.1.39	EntrezGene:102596233	Gene3D:3.20.20.80	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798
InterPro:Glyco_hydro_17	InterPro:Glycoside_hydrolase_SF	UniProt:M1CZJ9	PFAM:PF00332	PFAM:PF07983	EnsemblPlantsGene:PGSC0003DMG400030414
PGSC:PGSC0003DMG400030414	EnsemblPlants:PGSC0003DMT400078179	ScanProsite:PS00587	PANTHER:PTHR32227	PANTHER:PTHR32227:SF62	SMART:SM00768
SUPFAM:SSF51445	SignalP:SignalP-noTM	UniParc:UPI00029657B7	InterPro:X8	RefSeq:XP_006350772.1	SEG:seg

Description

Glucan endo-1,3-beta-glucosidase [Source:PGSC_GENE;Acc:PGSC0003DMG400030414]

Coordinates

chr6:-:56662677..56664444

Molecular Weight (calculated)

49416.4 Da

IEP (calculated)

4.470

GRAVY (calculated)

-0.059

Length

448 amino acids

Sequence
(BLAST)

001: MADLCFFLPI FSSFIFLLLC NGVSSDYLLG INYGTVADNL PPPSQVAAFI RDHTTLNKIK IFDANPEIIR AFADTGVWVT VTVPNGDIWS VSKPTAAQWW
101: VEQNVVPFYP RTRIDRICIG NEVMATGDKN LIAHLVPAMR AIHEALLAAG INDIQVSTPH SLGILSRSEP PSSGLFRRVY DRVIFAPMLE FHRETKSPFM
201: ICPYPFFGFN DETLDYALFK PNNGVYDEAT GMNYTNMFDA QLDAVYSAMK ALGYADVDIV VAETGWPSAG DPNQLGVSLE NAISYNVNLV KHVNSGVGTP
301: LMPNRTFETY VFALFNEDLK PSTSERNFGL FRPDFSPVYD VGILRNTQAS SPPAMAPEVS KKWCVPTTDA SDAALQSNID FVCSSGIDCQ PIKDGGPCYE
401: PNTIRAHASY AMNAYYQANG GKDLDCSFIN TGVVTNYDPS YEECRYDA

Best Arabidopsis Sequence Match ( AT5G24318.1 )
(BLAST)

001: MNYVLPFFSL SMFTIVGVLL ILSTGSEASI GVNYGTLANN LPPPQQVAEF LLHSTVINRI RLFDTDPQIL QAFANTGIAV TVTVPNDQIP HLTNLSSAKQ
101: WISDHIQPHF PSTNIIRILV GNEVISTADH LLIRTLIPAM QSLHTALVSA SLHRRIQIST PHSLGTLTNS TPPSSAKFRR GYDAQVLKPL LSFLRSTSSP
201: FVVNPYPFFG YSIETLDFAL FRPNPGLFDQ HTKLLYTNML DAQLDSVYSA MDKLGFSDVE IVIGEIGWPS EGDIDQIGVD VDTAAEFNKN LIARVDSGTG
301: TPLMPNRTFE TYIFALFNEN LKSGPTSERN FGIFRSDLTP IYDIGILRPT FRSSDPVYNP RSPVRGSSSK RWCVTKAGAE TVALQRNIDY VCGLGLDCRP
401: INEGGLCYLP NTVKAHSKYA MNLYYQTMEK HEFDCDFDNT GEITTIDPSY GNCEYQAN

Arabidopsis Description

O-Glycosyl hydrolases family 17 protein [Source:UniProtKB/TrEMBL;Acc:F4KH28]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.