Factsheet for PGSC0003DMT400048136

Subcellular Localization

min:

: max

Winner_takes_all: plastid, vacuole, cytosol

Predictor Summary:

nucleus 1
vacuole 2
extracellular 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g071520.1.1	Tomato	extracellular	92.13	85.64
PGSC0003DMT400015234	Potato	cytosol, peroxisome, plastid	66.85	64.15
PGSC0003DMT400079432	Potato	extracellular, vacuole	55.62	50.77
PGSC0003DMT400067771	Potato	extracellular, plasma membrane, vacuole	43.26	40.21
PGSC0003DMT400031570	Potato	extracellular, vacuole	45.22	38.7
PGSC0003DMT400012898	Potato	cytosol	44.38	38.44
PGSC0003DMT400033484	Potato	extracellular, vacuole	40.17	35.84
PGSC0003DMT400047660	Potato	extracellular	37.08	34.55
PGSC0003DMT400033482	Potato	extracellular, vacuole	41.57	31.22
PGSC0003DMT400078179	Potato	extracellular	38.2	30.36
PGSC0003DMT400001833	Potato	extracellular, vacuole	39.89	30.34
PGSC0003DMT400037469	Potato	plasma membrane, vacuole	38.76	30.26
PGSC0003DMT400013154	Potato	extracellular, vacuole	36.8	29.71
PGSC0003DMT400001908	Potato	extracellular	37.64	28.51
PGSC0003DMT400000943	Potato	extracellular, vacuole	38.2	27.42
PGSC0003DMT400022520	Potato	extracellular, vacuole	35.39	27.16
PGSC0003DMT400081837	Potato	extracellular	35.67	25.5
PGSC0003DMT400008245	Potato	vacuole	32.58	25.11
PGSC0003DMT400075818	Potato	extracellular	35.39	24.95
PGSC0003DMT400042484	Potato	extracellular, plasma membrane, vacuole	36.24	24.62
PGSC0003DMT400060499	Potato	extracellular	33.99	24.01
PGSC0003DMT400040463	Potato	mitochondrion, vacuole	34.55	21.77

Protein Annotations

EnsemblPlants:PGSC0003DMT400048136	EnsemblPlantsGene:PGSC0003DMG400018704	Gene3D:3.20.20.80	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_17	InterPro:Glycoside_hydrolase_SF
KEGG:00500+3.2.1.39	PANTHER:PTHR32227	PANTHER:PTHR32227:SF129	PFAM:PF00332	PGSC:PGSC0003DMG400018704	SUPFAM:SSF51445
UniParc:UPI0002949D37	UniProt:M1BM07	MapMan:50.3.2	:	:	:

Description

Glycosyl hydrolases family 17 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400018704]

Coordinates

chr11:+:42963516..42964898

Molecular Weight (calculated)

39610.9 Da

IEP (calculated)

9.635

GRAVY (calculated)

-0.190

Length

356 amino acids

Sequence
(BLAST)

001: MTGTYGINYG KISDNIPAPE DVLRLLRMNK IKNIRIYDAD SRVLRAFSGS GIEISVCLPN ELLKDVSLNG SIALEWIQVN LQPYLPGTSI RGIAVGNEIL
101: GGDTSISEAL VPAVRSVYRA LRRLGLTNTI EVSTPHSEAI FSSTYPPSNG TFKESMMPYL GPLLRFFNRV GSPLYINAYP FLAYKFDPSH IDINYALFQP
201: NKGIVDPKTK LHYDNMFDAM VDATYVALEK LGYTKMQVIV SETGWASKGD DNEAGADPKN ARTYNFNLHK RLMKKKGTPY RPKMMAKGYV FALFNENLKP
301: GPTSERNFGL FKADGSIAYD IGFKGLVSSA SSKCKIRKLQ IIALFLTNLE QGWIQD

Best Arabidopsis Sequence Match ( AT3G15800.1 )
(BLAST)

001: MGYCVPLRKS PTSHMVFSSF FLSFLLVFSI LSSQTAVAFI GTYGVNYGRI ADNLPSPDAV ATLLKSAKIR NTRIYDADHS VLTAFRGTGI EIIVGLGNEF
101: LKDISVGEDR AMNWIKENVE PFIRGGTKIS GIAVGNEILG GTDIGLWEAL LPAAKNVYSA LRRLGLHNVV EVSSPHSEAV FANSYPPSSC TFRDDVAPFM
201: KPLLAFFWQI QSPFYINAYP FLAYKSDPIT IDINYALFEH NKGILDPKTK LHYDNMFDAM VDASYAALEK AGYTKVPVIV SETGWASKGD ADEPGASVKN
301: ARTYNRNLRK RLQKRKGTPY RPDMVVRAYV FALFNENSKP GPTSERNFGL FKPDGTIAYD IGLTGLKSSS ATRYRFKSSL VSASAFTCLL LLFHRLFHL

Arabidopsis Description

Glycosyl hydrolase superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J030]
SUBAcon: [golgi,plastid,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.