Factsheet for PGSC0003DMT400042484

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 6
plasma membrane 7
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane, vacuole
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g080660.2.1	Tomato	golgi, plasma membrane, vacuole	75.76	96.13
AT1G11820.2	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	72.9	74.76
KRH51109	Soybean	vacuole	73.66	73.81
Bra016812.1-P	Field mustard	extracellular	70.61	71.29
CDY21013	Canola	extracellular	70.61	71.29
VIT_10s0116g01640.t01	Wine grape	extracellular, vacuole	76.53	70.72
CDY31214	Canola	vacuole	70.23	70.5
KRH11452	Soybean	extracellular, vacuole	44.66	69.64
GSMUA_Achr4P27760_001	Banana	cytosol, extracellular, vacuole	32.44	69.11
KRH02051	Soybean	mitochondrion, vacuole	71.56	68.68
GSMUA_Achr2P13900_001	Banana	cytosol	56.87	59.96
GSMUA_Achr4P33420_001	Banana	vacuole	56.3	57.5
Os07t0510200-01	Rice	plasma membrane	55.73	54.07
TraesCS2B01G274900.1	Wheat	plasma membrane	54.01	53.2
TraesCS2A01G224900.1	Wheat	plasma membrane, vacuole	54.01	53.2
TraesCS2D01G230900.1	Wheat	plasma membrane	53.82	53.01
KXG36295	Sorghum	plasma membrane	54.58	52.87
PGSC0003DMT400075818	Potato	extracellular	50.0	51.88
PGSC0003DMT400081837	Potato	extracellular	41.41	43.57
PGSC0003DMT400040463	Potato	mitochondrion, vacuole	45.42	42.12
Zm00001d021598_P005	Maize	plasma membrane	52.86	42.1
PGSC0003DMT400048136	Potato	cytosol, plastid, vacuole	24.62	36.24
PGSC0003DMT400000943	Potato	extracellular, vacuole	33.4	35.28
PGSC0003DMT400078179	Potato	extracellular	29.96	35.04
PGSC0003DMT400001833	Potato	extracellular, vacuole	31.3	35.04
PGSC0003DMT400033482	Potato	extracellular, vacuole	31.68	35.02
PGSC0003DMT400047660	Potato	extracellular	25.38	34.82
PGSC0003DMT400067771	Potato	extracellular, plasma membrane, vacuole	25.38	34.73
PGSC0003DMT400001908	Potato	extracellular	30.73	34.26
PGSC0003DMT400022520	Potato	extracellular, vacuole	29.96	33.84
PGSC0003DMT400037469	Potato	plasma membrane, vacuole	29.2	33.55
PGSC0003DMT400008245	Potato	vacuole	28.24	32.03
PGSC0003DMT400033484	Potato	extracellular, vacuole	24.24	31.83
PGSC0003DMT400060499	Potato	extracellular	30.34	31.55
PGSC0003DMT400015234	Potato	cytosol, peroxisome, plastid	22.33	31.54
PGSC0003DMT400012898	Potato	cytosol	24.62	31.39
PGSC0003DMT400079432	Potato	extracellular, vacuole	23.28	31.28
PGSC0003DMT400031570	Potato	extracellular, vacuole	24.05	30.29
PGSC0003DMT400013154	Potato	extracellular, vacuole	24.24	28.8
HORVU2Hr1G047410.3	Barley	vacuole	30.15	26.2

Protein Annotations

KEGG:00500+3.2.1.39	EntrezGene:102600683	Gene3D:3.20.20.80	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798
InterPro:Glyco_hydro_17	InterPro:Glycoside_hydrolase_SF	UniProt:M1BD42	PFAM:PF00332	PFAM:PF07983	EnsemblPlantsGene:PGSC0003DMG402016475
PGSC:PGSC0003DMG402016475	EnsemblPlants:PGSC0003DMT400042484	ScanProsite:PS00587	PANTHER:PTHR32227	PANTHER:PTHR32227:SF120	SMART:SM00768
SUPFAM:SSF51445	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI00029661FF	InterPro:X8	RefSeq:XP_006348130.1
SEG:seg	:	:	:	:	:

Description

Glucan endo-1,3-beta-glucosidase [Source:PGSC_GENE;Acc:PGSC0003DMG402016475]

Coordinates

chr2:+:36454364..36457624

Molecular Weight (calculated)

57452.4 Da

IEP (calculated)

5.830

GRAVY (calculated)

-0.026

Length

524 amino acids

Sequence
(BLAST)

001: MANTKKFPPF FLFLLFCCCF FSTSSSNFVP EIKVQQNKDE PYVGVNIGTD VSNLLSPADL VAFLQLQKIT HIRLYDADPD ILKALSKTKI RVIISVPNNQ
101: ILAIGSSNTT AAAWIGRNVA AYYPETLITA IAVGDEILTT VPSSAPLLMP AIESLYSALV AANLHNQIKI STPNAASIIL DPFPPSQAFF NQSMSSVLSK
201: LLQFCSRTQS PLMMNLYPYY VFMQNKGVVP IDNSLFKPLT PSKEMVDPNT LLHYTNVLDA MIDSVYFSMK NLNTTDVVVL VTESGWPSKG DSKEPYATID
301: NADTYNSNLI KHIIDRSGTP LHPELTSSVY IYELFNEDLR SPPLSEANWG LFYGNSTPVY LLHVSGSGTF LANDTTNQTY CIAMDGVDKR TMQTALDWAC
401: GPGRANCSEI QPGESCYQPN DVKNHASYAF DSYYQKEGGS PSSCDFKGVA MITTTDPSHG SCIFPGSKKV SNKTSEVANA TQASGANTIR FLGAQTSKFD
501: KNVHVLFGVT LCLFYYSLIQ VQLS

Best Arabidopsis Sequence Match ( AT1G11820.2 )
(BLAST)

001: MAFTSMVSTV PVLFFFFTLL LISANSSSLS HNIKVQEQDK DPFVGFNIGT DVSNLLSPTE LVKFLQAQKV NHVRLYDADP ELLKALAKTK VRVIISVPNN
101: QLLAIGSSNS TAASWIGRNV VAYYPETLIT AISVGDEVLT TVPSSAPLLL PAIESLYNAL VASNLHTQIK VSTPHAASIM LDTFPPSQAY FNQTWHSIMV
201: PLLQFLSKTG SPLMMNLYPY YVYMQNKGVV PLDNCLFEPL TPSKEMVDPN TLLHYTNVLD AMVDAAYVSM KNLNVSDVAV LVTESGWPSK GDSKEPYATI
301: DNADTYNSNL IKHVFDRTGT PLHPEMTSSV YIYELFNEDL RAPPVSEASW GLFYGNSTPV YLLHVSGSGT FLANDTTNQT YCIAMDGVDA KTLQAALDWA
401: CGPGRSNCSE IQPGESCYQP NNVKGHASFA FNSYYQKEGR ASGSCDFKGV AMITTTDPSH GSCIFPGSKK VGNRTQTVVN STEVAAGEAT SRSLSRGFCV
501: TIMILVTFSI L

Arabidopsis Description

Glucan endo-1,3-beta-glucosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:O65399]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.