Factsheet for PGSC0003DMT400015234

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

cytosol 2
extracellular 1
vacuole 1
mitochondrion 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g073710.2.1	Tomato	golgi, mitochondrion, plastid, vacuole	95.69	86.17
KRH09724	Soybean	extracellular, plasma membrane, vacuole	70.62	67.88
PGSC0003DMT400048136	Potato	cytosol, plastid, vacuole	64.15	66.85
KRH47445	Soybean	extracellular, vacuole	70.08	66.67
KRH44462	Soybean	extracellular, vacuole	69.54	66.32
KRH23581	Soybean	extracellular, vacuole	64.15	66.3
VIT_09s0002g06880.t01	Wine grape	vacuole	71.16	66.17
Bra021137.1-P	Field mustard	plasma membrane	66.04	63.47
CDY21869	Canola	plasma membrane	66.31	62.92
CDY20153	Canola	plasma membrane	66.31	62.92
AT3G15800.1	Thale cress	golgi, plastid, vacuole	65.5	60.9
PGSC0003DMT400079432	Potato	extracellular, vacuole	57.14	54.36
CDY30112	Canola	cytosol	59.3	52.01
CDX97707	Canola	plastid	61.99	41.89
Bra027207.1-P	Field mustard	plastid	57.68	40.53
PGSC0003DMT400067771	Potato	extracellular, plasma membrane, vacuole	40.43	39.16
PGSC0003DMT400012898	Potato	cytosol	42.05	37.96
PGSC0003DMT400031570	Potato	extracellular, vacuole	41.78	37.26
PGSC0003DMT400033484	Potato	extracellular, vacuole	39.08	36.34
PGSC0003DMT400047660	Potato	extracellular	34.5	33.51
PGSC0003DMT400033482	Potato	extracellular, vacuole	39.89	31.22
PGSC0003DMT400001833	Potato	extracellular, vacuole	39.08	30.98
PGSC0003DMT400013154	Potato	extracellular, vacuole	36.39	30.61
PGSC0003DMT400000943	Potato	extracellular, vacuole	38.54	28.83
PGSC0003DMT400037469	Potato	plasma membrane, vacuole	35.31	28.73
PGSC0003DMT400022520	Potato	extracellular, vacuole	35.85	28.66
PGSC0003DMT400001908	Potato	extracellular	35.58	28.09
PGSC0003DMT400078179	Potato	extracellular	33.42	27.68
PGSC0003DMT400075818	Potato	extracellular	34.77	25.54
PGSC0003DMT400008245	Potato	vacuole	31.81	25.54
PGSC0003DMT400081837	Potato	extracellular	34.23	25.5
PGSC0003DMT400042484	Potato	extracellular, plasma membrane, vacuole	31.54	22.33
PGSC0003DMT400040463	Potato	mitochondrion, vacuole	33.69	22.12
PGSC0003DMT400060499	Potato	extracellular	29.92	22.02

Protein Annotations

EnsemblPlants:PGSC0003DMT400015234	EnsemblPlantsGene:PGSC0003DMG400005944	Gene3D:3.20.20.80	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_17	InterPro:Glycoside_hydrolase_SF
KEGG:00500+3.2.1.39	PANTHER:PTHR32227	PANTHER:PTHR32227:SF129	PFAM:PF00332	PGSC:PGSC0003DMG400005944	SEG:seg
SUPFAM:SSF51445	UniParc:UPI0002949152	UniProt:M1A5N8	MapMan:50.3.2	:	:

Description

Glycosyl hydrolase family 17 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400005944]

Coordinates

chr6:+:54272483..54274150

Molecular Weight (calculated)

41228.4 Da

IEP (calculated)

6.641

GRAVY (calculated)

-0.082

Length

371 amino acids

Sequence
(BLAST)

001: MQVLVADAFT GTYGINYGRL ADNIPAPESV VTLLRANKIK NVRIYDADHS VLTAFKDSEI QIIIGLGNEF LKDISVNEDR AIEWVKINVQ PYLPGTLIRG
101: IAVGNEILGG GDTELWEVLV PAVKNVYNAL DKLDLSHKIE VSSPHSEAVF ENTYPPSAAV FKESILPYML PLLNFSKQIG SPFYINAYPF LAYKSDPSHI
201: DLNYALFEKS SGIYDAKTKL HYDNMFEAMI DAAYFALEKA GFEKMPVICS ETGWASQGDE NEAGANVKNA RTYNNNLHKL LLKKKGTPHR PKMVMRAYIF
301: ALFNENQKPG PTSERNFGLF KADGSIAYKI GFRGLVPSSA SKDFVLRGGF WSSQWFVALA SAVVLTQFLD L

Best Arabidopsis Sequence Match ( AT3G15800.1 )
(BLAST)

001: MGYCVPLRKS PTSHMVFSSF FLSFLLVFSI LSSQTAVAFI GTYGVNYGRI ADNLPSPDAV ATLLKSAKIR NTRIYDADHS VLTAFRGTGI EIIVGLGNEF
101: LKDISVGEDR AMNWIKENVE PFIRGGTKIS GIAVGNEILG GTDIGLWEAL LPAAKNVYSA LRRLGLHNVV EVSSPHSEAV FANSYPPSSC TFRDDVAPFM
201: KPLLAFFWQI QSPFYINAYP FLAYKSDPIT IDINYALFEH NKGILDPKTK LHYDNMFDAM VDASYAALEK AGYTKVPVIV SETGWASKGD ADEPGASVKN
301: ARTYNRNLRK RLQKRKGTPY RPDMVVRAYV FALFNENSKP GPTSERNFGL FKPDGTIAYD IGLTGLKSSS ATRYRFKSSL VSASAFTCLL LLFHRLFHL

Arabidopsis Description

Glycosyl hydrolase superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J030]
SUBAcon: [golgi,plastid,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.