Subcellular Localization
min:
: max
Winner_takes_all: golgi, plastid, vacuole
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- vacuole 3
- extracellular 2
- endoplasmic reticulum 2
- plasma membrane 2
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021137.1-P | Field mustard | plasma membrane | 80.95 | 83.68 |
| CDY21869 | Canola | plasma membrane | 80.95 | 82.61 |
| CDY20153 | Canola | plasma membrane | 80.7 | 82.35 |
| KRH09724 | Soybean | extracellular, plasma membrane, vacuole | 68.42 | 70.73 |
| KRH47445 | Soybean | extracellular, vacuole | 66.92 | 68.46 |
| KRH44462 | Soybean | extracellular, vacuole | 66.67 | 68.38 |
| KRH23581 | Soybean | extracellular, vacuole | 60.15 | 66.85 |
| VIT_09s0002g06880.t01 | Wine grape | vacuole | 65.91 | 65.91 |
| PGSC0003DMT400015234 | Potato | cytosol, peroxisome, plastid | 60.9 | 65.5 |
| CDY30112 | Canola | cytosol | 67.42 | 63.59 |
| Solyc06g073710.2.1 | Tomato | golgi, mitochondrion, plastid, vacuole | 60.9 | 58.98 |
| AT2G26600.1 | Thale cress | endoplasmic reticulum, golgi, vacuole | 55.64 | 57.22 |
| CDX97707 | Canola | plastid | 72.18 | 52.46 |
| Bra027207.1-P | Field mustard | plastid | 67.92 | 51.33 |
| AT2G27500.1 | Thale cress | vacuole | 41.6 | 42.35 |
| AT4G18340.1 | Thale cress | vacuole | 40.1 | 40.3 |
| AT3G46570.1 | Thale cress | vacuole | 34.84 | 39.04 |
| AT1G32860.1 | Thale cress | extracellular, plasma membrane, vacuole | 41.35 | 38.73 |
| AT1G30080.1 | Thale cress | vacuole | 39.6 | 38.73 |
| AT5G42100.1 | Thale cress | extracellular, vacuole | 40.35 | 37.88 |
| AT5G42720.1 | Thale cress | extracellular, plasma membrane, vacuole | 38.6 | 35.16 |
| AT4G26830.2 | Thale cress | endoplasmic reticulum, extracellular | 39.6 | 34.42 |
| AT2G05790.1 | Thale cress | extracellular, vacuole | 39.1 | 33.05 |
| AT4G34480.1 | Thale cress | extracellular, plasma membrane, vacuole | 39.35 | 31.15 |
| AT2G16230.1 | Thale cress | vacuole | 39.1 | 31.01 |
| AT5G55180.2 | Thale cress | endoplasmic reticulum, extracellular | 36.09 | 30.97 |
| AT3G55430.1 | Thale cress | extracellular | 34.59 | 30.73 |
| AT5G24318.1 | Thale cress | extracellular | 35.09 | 30.57 |
| AT3G07320.1 | Thale cress | extracellular, vacuole | 34.84 | 30.22 |
| AT3G23770.1 | Thale cress | extracellular | 34.34 | 28.78 |
| AT4G14080.1 | Thale cress | vacuole | 33.08 | 27.62 |
| AT2G01630.1 | Thale cress | extracellular | 34.59 | 27.54 |
| AT5G56590.1 | Thale cress | extracellular, plasma membrane, vacuole | 34.84 | 27.47 |
| AT3G13560.4 | Thale cress | plasma membrane | 34.59 | 27.33 |
| AT4G29360.2 | Thale cress | vacuole | 35.34 | 25.92 |
| AT1G66250.1 | Thale cress | vacuole | 32.08 | 25.35 |
| AT1G11820.2 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 31.58 | 24.66 |
| AT2G39640.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 31.33 | 22.77 |
Protein Annotations
| KEGG:00500+3.2.1.39 | Gene3D:3.20.20.80 | MapMan:50.3.2 | EntrezGene:820823 | UniProt:A0A178VLV9 | ProteinID:AEE75728.1 |
| ArrayExpress:AT3G15800 | EnsemblPlantsGene:AT3G15800 | RefSeq:AT3G15800 | TAIR:AT3G15800 | RefSeq:AT3G15800-TAIR-G | EnsemblPlants:AT3G15800.1 |
| TAIR:AT3G15800.1 | UniProt:F4J030 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004553 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0016020 | GO:GO:0016787 | GO:GO:0030246 | GO:GO:0030247 | GO:GO:0031225 | GO:GO:0046658 |
| InterPro:Glyco_hydro_17 | InterPro:Glycoside_hydrolase_SF | RefSeq:NP_188201.1 | ProteinID:OAP06718.1 | PFAM:PF00332 | PO:PO:0009005 |
| PANTHER:PTHR32227 | PANTHER:PTHR32227:SF129 | SUPFAM:SSF51445 | TMHMM:TMhelix | UniParc:UPI000004871D | SEG:seg |
Description
Glycosyl hydrolase superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J030]
Coordinates
chr3:+:5344989..5347147
Molecular Weight (calculated)
44172.1 Da
IEP (calculated)
9.564
GRAVY (calculated)
-0.031
Length
399 amino acids
Sequence
(BLAST)
(BLAST)
001: MGYCVPLRKS PTSHMVFSSF FLSFLLVFSI LSSQTAVAFI GTYGVNYGRI ADNLPSPDAV ATLLKSAKIR NTRIYDADHS VLTAFRGTGI EIIVGLGNEF
101: LKDISVGEDR AMNWIKENVE PFIRGGTKIS GIAVGNEILG GTDIGLWEAL LPAAKNVYSA LRRLGLHNVV EVSSPHSEAV FANSYPPSSC TFRDDVAPFM
201: KPLLAFFWQI QSPFYINAYP FLAYKSDPIT IDINYALFEH NKGILDPKTK LHYDNMFDAM VDASYAALEK AGYTKVPVIV SETGWASKGD ADEPGASVKN
301: ARTYNRNLRK RLQKRKGTPY RPDMVVRAYV FALFNENSKP GPTSERNFGL FKPDGTIAYD IGLTGLKSSS ATRYRFKSSL VSASAFTCLL LLFHRLFHL
101: LKDISVGEDR AMNWIKENVE PFIRGGTKIS GIAVGNEILG GTDIGLWEAL LPAAKNVYSA LRRLGLHNVV EVSSPHSEAV FANSYPPSSC TFRDDVAPFM
201: KPLLAFFWQI QSPFYINAYP FLAYKSDPIT IDINYALFEH NKGILDPKTK LHYDNMFDAM VDASYAALEK AGYTKVPVIV SETGWASKGD ADEPGASVKN
301: ARTYNRNLRK RLQKRKGTPY RPDMVVRAYV FALFNENSKP GPTSERNFGL FKPDGTIAYD IGLTGLKSSS ATRYRFKSSL VSASAFTCLL LLFHRLFHL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.