Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 7
- plasma membrane 6
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY68826 | Canola | cytosol, endoplasmic reticulum, peroxisome | 70.04 | 89.86 |
| CDY14214 | Canola | endoplasmic reticulum, extracellular, vacuole | 84.38 | 89.47 |
| CDY62033 | Canola | extracellular, plasma membrane, vacuole | 87.5 | 89.31 |
| CDY06818 | Canola | extracellular, plasma membrane, vacuole | 82.35 | 89.24 |
| Bra011100.1-P | Field mustard | extracellular, plasma membrane, vacuole | 82.35 | 89.24 |
| Bra010330.1-P | Field mustard | cytosol | 85.48 | 88.91 |
| AT5G56590.1 | Thale cress | extracellular, plasma membrane, vacuole | 54.41 | 58.5 |
| AT3G46570.1 | Thale cress | vacuole | 27.39 | 41.85 |
| AT4G26830.2 | Thale cress | endoplasmic reticulum, extracellular | 35.29 | 41.83 |
| AT2G05790.1 | Thale cress | extracellular, vacuole | 34.56 | 39.83 |
| AT2G01630.1 | Thale cress | extracellular | 36.4 | 39.52 |
| AT5G55180.2 | Thale cress | endoplasmic reticulum, extracellular | 33.64 | 39.35 |
| AT2G27500.1 | Thale cress | vacuole | 28.31 | 39.29 |
| AT5G42720.1 | Thale cress | extracellular, plasma membrane, vacuole | 30.33 | 37.67 |
| AT1G66250.1 | Thale cress | vacuole | 34.56 | 37.23 |
| AT1G30080.1 | Thale cress | vacuole | 27.76 | 37.01 |
| AT2G26600.1 | Thale cress | endoplasmic reticulum, golgi, vacuole | 26.29 | 36.86 |
| AT1G32860.1 | Thale cress | extracellular, plasma membrane, vacuole | 28.86 | 36.85 |
| AT3G07320.1 | Thale cress | extracellular, vacuole | 31.07 | 36.74 |
| AT5G24318.1 | Thale cress | extracellular | 30.88 | 36.68 |
| AT3G13560.4 | Thale cress | plasma membrane | 34.01 | 36.63 |
| AT1G11820.2 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 34.38 | 36.59 |
| AT4G34480.1 | Thale cress | extracellular, plasma membrane, vacuole | 33.82 | 36.51 |
| AT4G18340.1 | Thale cress | vacuole | 26.29 | 36.02 |
| AT3G55430.1 | Thale cress | extracellular | 29.6 | 35.86 |
| AT3G15800.1 | Thale cress | golgi, plastid, vacuole | 25.92 | 35.34 |
| AT2G16230.1 | Thale cress | vacuole | 32.35 | 34.99 |
| AT3G23770.1 | Thale cress | extracellular | 29.96 | 34.24 |
| AT5G42100.1 | Thale cress | extracellular, vacuole | 26.65 | 34.12 |
| AT4G14080.1 | Thale cress | vacuole | 29.04 | 33.05 |
| AT2G39640.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 26.29 | 26.05 |
Protein Annotations
| KEGG:00500+3.2.1.39 | Gene3D:3.20.20.80 | MapMan:50.3.2 | EntrezGene:829057 | ProteinID:AEE85621.2 | ArrayExpress:AT4G29360 |
| EnsemblPlantsGene:AT4G29360 | RefSeq:AT4G29360 | TAIR:AT4G29360 | RefSeq:AT4G29360-TAIR-G | EnsemblPlants:AT4G29360.2 | TAIR:AT4G29360.2 |
| UniProt:F4JMY6 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004553 | GO:GO:0005975 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016787 | GO:GO:0016798 | InterPro:Glyco_hydro_17 | InterPro:Glycoside_hydrolase_SF | RefSeq:NP_001320085.1 |
| PFAM:PF00332 | PFAM:PF07983 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | ScanProsite:PS00587 | PANTHER:PTHR32227 | PANTHER:PTHR32227:SF88 |
| SMART:SM00768 | SUPFAM:SSF51445 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI000848397B | InterPro:X8 |
| SEG:seg | : | : | : | : | : |
Description
O-Glycosyl hydrolases family 17 protein [Source:TAIR;Acc:AT4G29360]
Coordinates
chr4:-:14451380..14453966
Molecular Weight (calculated)
58743.5 Da
IEP (calculated)
4.767
GRAVY (calculated)
-0.022
Length
544 amino acids
Sequence
(BLAST)
(BLAST)
001: MGQRLNLVFW IFVSILAFLS MSLHSNPLLD FGMASKIGIC YGRNADNLPS PNRVSELIQH LNIKFVRIYD ANIDVLKAFA NTGIELMIGV PNADLLAFAQ
101: FQSNVDTWLS NNILPYYPST KITSISVGLE VTEAPDNATG LVLPAMRNIH TALKKSGLDK KIKISSSHSL AILSRSFPPS SASFSKKHSA FLKPMLEFLV
201: ENESPFMIDL YPYYAYRDST EKVPLEYALF ESSSQVVDPA TGLLYSNMFD AQLDAIYFAL TAMSFKTVKV MVTESGWPSK GSPKETAATP ENALAYNTNL
301: IRHVIGDPGT PAKPGEEIDV YLFSLFNENR KPGIESERNW GMFYANGTNV YALDFTGENT TPVSPTNSTT GTSPSPSSSP IINGNSTVTI GGGGGGGTKK
401: WCIASSQASV TELQTALDWA CGPGNVDCSA VQPDQPCFEP DTVLSHASYA FNTYYQQSGA SSIDCSFNGA SVEVDKDPSY GNCLYMIAPA TDGFNRTMAG
501: NITGNITAID SPLASPSSTN EAFRQMVVAV SVLLPCFVVC SSIW
101: FQSNVDTWLS NNILPYYPST KITSISVGLE VTEAPDNATG LVLPAMRNIH TALKKSGLDK KIKISSSHSL AILSRSFPPS SASFSKKHSA FLKPMLEFLV
201: ENESPFMIDL YPYYAYRDST EKVPLEYALF ESSSQVVDPA TGLLYSNMFD AQLDAIYFAL TAMSFKTVKV MVTESGWPSK GSPKETAATP ENALAYNTNL
301: IRHVIGDPGT PAKPGEEIDV YLFSLFNENR KPGIESERNW GMFYANGTNV YALDFTGENT TPVSPTNSTT GTSPSPSSSP IINGNSTVTI GGGGGGGTKK
401: WCIASSQASV TELQTALDWA CGPGNVDCSA VQPDQPCFEP DTVLSHASYA FNTYYQQSGA SSIDCSFNGA SVEVDKDPSY GNCLYMIAPA TDGFNRTMAG
501: NITGNITAID SPLASPSSTN EAFRQMVVAV SVLLPCFVVC SSIW
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.