Factsheet for Bra040606.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, vacuole, cytosol

Predictor Summary:

nucleus 1
vacuole 2
extracellular 1
endoplasmic reticulum 1
plasma membrane 2
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, vacuole
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	vacuole
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001068.1-P
Bra040606.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02850.1	Bra001068.1-P	AT3G02850.1	15298894
AT3G02850.1	Bra040606.1-P	AT3G02850.1	15298894

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51528	Canola	cytosol	99.88	99.88
Bra001068.1-P	Field mustard	plasma membrane	85.52	93.04
AT3G02850.1	Thale cress	cytosol, plasma membrane, vacuole	92.4	92.51
KRH72964	Soybean	cytosol	74.79	73.03
KRH17312	Soybean	cytosol, plastid	74.79	72.94
PGSC0003DMT400034446	Potato	cytosol	71.29	71.38
Solyc05g051220.2.1	Tomato	cytosol	70.45	70.87
Solyc11g011500.1.1	Tomato	cytosol	70.69	70.69
Bra036395.1-P	Field mustard	cytosol	65.26	66.22
Bra013296.1-P	Field mustard	plasma membrane	24.97	30.13
Bra017567.1-P	Field mustard	plasma membrane	23.76	29.98
Bra037049.1-P	Field mustard	plastid	23.28	29.92
Bra011367.1-P	Field mustard	plastid	23.4	29.8
Bra032037.1-P	Field mustard	cytosol	30.76	29.65
Bra025028.1-P	Field mustard	cytosol, endoplasmic reticulum, plasma membrane	23.16	28.83
Bra011351.1-P	Field mustard	cytosol	30.4	28.77
Bra021012.1-P	Field mustard	plasma membrane	24.61	28.65
Bra013599.1-P	Field mustard	cytosol	29.67	28.54
Bra007785.1-P	Field mustard	cytosol	29.67	28.41
Bra021279.1-P	Field mustard	nucleus	16.77	24.3

Protein Annotations

Gene3D:1.10.287.630	Gene3D:1.10.287.70	Gene3D:1.25.40.20	Gene3D:2.60.120.10	MapMan:24.3.2.2	InterPro:Ankyrin_rpt
InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	EnsemblPlantsGene:Bra040606	EnsemblPlants:Bra040606.1	EnsemblPlants:Bra040606.1-P	GO:GO:0003674
GO:GO:0005215	GO:GO:0005216	GO:GO:0005244	GO:GO:0005249	GO:GO:0005267	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0006810	GO:GO:0006811	GO:GO:0006813	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0034765	GO:GO:0055085	GO:GO:0071805
InterPro:IPR000595	InterPro:IPR002110	InterPro:IPR014710	InterPro:IPR020683	InterPro:IPR021789	InterPro:IPR036770
InterPro:Ion_trans_dom	InterPro:KHA_dom	InterPro:K_chnl_volt-dep_EAG/ELK/ERG	UniProt:M4FHM8	PFAM:PF00027	PFAM:PF00520
PFAM:PF11834	PFAM:PF12796	PRINTS:PR01415	PRINTS:PR01463	PFscan:PS50042	PFscan:PS50088
PFscan:PS50297	PFscan:PS51490	PANTHER:PTHR10217	PANTHER:PTHR10217:SF478	InterPro:RmlC-like_jellyroll	SMART:SM00100
SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF51206	SUPFAM:SSF81324	TMHMM:TMhelix	UniParc:UPI0002547568
InterPro:cNMP-bd-like	InterPro:cNMP-bd_dom	SEG:seg	:	:	:

Description

AT3G02850 (E=0.0) SKOR | SKOR; cyclic nucleotide binding / inward rectifier potassium channel/ outward rectifier potassium channel

Coordinates

chrA05:+:23543895..23547872

Molecular Weight (calculated)

94059.6 Da

IEP (calculated)

6.652

GRAVY (calculated)

-0.069

Length

829 amino acids

Sequence
(BLAST)

001: MGGSSGGGVS YRSEVDSDVE LEDYEVDDDF GEGIVESRGN RFNPLTNFLG LDFTGGNGGK FTVINGIRDI SRGSVVHPDS GCYKAWTMFI VIWALYSSFF
101: TPLEFGFFRG LPGNLFILDI LGQIAFLVDI VLTFFVAYRD SRTYRMVYRR SSIALRYLKS TFIIDFLSCM PWDIIYKVAG RKEEVRYLLL IRLYRVRRVI
201: LFFHKMEKDI RINYLFTRIV KLIFVELYCT HTAACIFYYL ATTLPASQEG YTWIGSLKLG DYSYAKFREI DLWTRYTTSM YFAVVTMATV GYGDIHAVNM
301: REMIFAMAYI SFDMILGAYL IGNMTALIVK GSKTERFRDK MADIMRYMNR NKLGRNIRGQ ITGHLRLQYE SSYTEAAVLQ DIPVSIRAKI AQTLYLSYIE
401: KVPLFRGCSS EFINQIVIRL HEEFFLPGEV IMEQGSVVDQ LYFVCHGVLE EIGTAKDGSE EIVSLLQPDN SFGEISILCN IPQPYTVRVS ELCRVLRLDK
501: QSFMNILEIY FHDGRRILNN LLEGKESNGR IKQLESDITF HISKQEAELA LKLNSAAFYG DLYQLKSLIR AGADPNKTDY DGRSPLHLAA SRGYEDITLY
601: LIQESVDVNI KDKLGNTPLL EAIKNGNDRV AALLVKEGAT LSIENAGTFL CTVVAKGDSD FLKRLLNNGI DPNSKDYDQR TPLHVASSEG LYLLARQLVE
701: AGANVLKKDR WGNTPLDEAL VCGNKMLIKL LEDAKTSQMS TFLNSSKEIK DKVYKKKCTV YSSHPNDSKE KRRRGIVLWV PKSIEELVRS AAEQLNFPEA
801: SCVLSEDEGK IIDVELISDG QKLYLTVET

Best Arabidopsis Sequence Match ( AT3G02850.1 )
(BLAST)

001: MGGSSGGGVS YRSGGESDVE LEDYEVDDFR DGIVESRGNR FNPLTNFLGL DFAGGSGGKF TVINGIRDIS RGSIVHPDNR WYKAWTMFIL IWALYSSFFT
101: PLEFGFFRGL PENLFILDIA GQIAFLVDIV LTFFVAYRDS RTYRMIYKRS SIALRYLKST FIIDLLACMP WDIIYKAAGE KEEVRYLLLI RLYRVHRVIL
201: FFHKMEKDIR INYLFTRIVK LIFVELYCTH TAACIFYYLA TTLPASQEGY TWIGSLKLGD YSYSKFREID LWTRYTTSMY FAVVTMATVG YGDIHAVNMR
301: EMIFAMVYIS FDMILGAYLI GNMTALIVKG SKTERFRDKM ADIMRYMNRN KLGRNIRGQI TGHLRLQYES SYTEAAVLQD IPVSIRAKIA QTLYLPYIEK
401: VPLFRGCSSE FINQIVIRLH EEFFLPGEVI MEQGSVVDQL YFVCHGVLEE IGITKDGSEE IVAVLQPDHS FGEISILCNI PQPYTVRVAE LCRILRLDKQ
501: SFMNILEIFF HDGRRILNNL LEGKESNVRI KQLESDITFH ISKQEAELAL KLNSAAFYGD LYQLKSLIRA GGDPNKTDYD GRSPLHLAAS RGYEDITLYL
601: IQESVDVNIK DKLGSTPLLE AIKNGNDRVA ALLVKEGATL NIENAGTFLC TVVAKGDSDF LKRLLSNGID PNSKDYDHRT PLHVAASEGF YVLAIQLVEA
701: SANVLAKDRW GNTPLDEALG CGNKMLIKLL EDAKNSQISS FPSGSKEPKD KVYKKKCTVY FSHPGDSKEK RRRGIVLWVP RSIEELIRTA KEQLNVPEAS
801: CVLSEDEAKI IDVDLISDGQ KLYLAVET

Arabidopsis Description

SKORSKOR [Source:UniProtKB/TrEMBL;Acc:A0A178VHK5]
SUBAcon: [plasma membrane,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.