Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G168100.1 | Wheat | cytosol | 94.54 | 94.47 |
| TraesCS3A01G134300.3 | Wheat | cytosol | 89.87 | 89.87 |
| HORVU3Hr1G029210.3 | Barley | cytosol | 89.87 | 89.1 |
| Os01t0208600-01 | Rice | cytosol | 65.63 | 63.12 |
| KXG31590 | Sorghum | cytosol | 60.25 | 56.34 |
| Zm00001d008906_P003 | Maize | cytosol | 55.49 | 51.04 |
| VIT_10s0003g01270.t01 | Wine grape | cytosol | 25.18 | 34.4 |
| GSMUA_AchrUn_... | Banana | cytosol | 30.32 | 34.03 |
| GSMUA_Achr10P... | Banana | cytosol | 30.87 | 33.33 |
| AT2G34150.2 | Thale cress | nucleus | 20.89 | 32.64 |
| GSMUA_Achr2P15470_001 | Banana | nucleus | 27.2 | 32.02 |
| CDY17225 | Canola | nucleus | 19.88 | 31.44 |
| Bra005450.1-P | Field mustard | nucleus | 19.25 | 27.82 |
| Bra010847.1-P | Field mustard | nucleus | 20.42 | 27.29 |
| CDX90172 | Canola | nucleus | 20.42 | 27.29 |
| CDY43322 | Canola | nucleus | 20.11 | 27.07 |
| CDY63143 | Canola | nucleus | 18.16 | 26.24 |
| AT1G29170.1 | Thale cress | nucleus | 20.42 | 25.69 |
| KRH42863 | Soybean | nucleus | 26.58 | 25.54 |
| Solyc02g076840.2.1 | Tomato | nucleus | 24.4 | 24.06 |
| CDX78876 | Canola | nucleus | 13.09 | 23.14 |
| TraesCS2D01G088200.1 | Wheat | nucleus | 6.94 | 22.19 |
| KRH58965 | Soybean | nucleus | 16.45 | 21.31 |
| VIT_08s0058g00770.t01 | Wine grape | cytosol | 2.03 | 18.31 |
| TraesCS4D01G190300.1 | Wheat | nucleus | 16.06 | 15.8 |
| CDX78875 | Canola | extracellular, vacuole | 9.66 | 15.14 |
| CDX99451 | Canola | nucleus | 17.3 | 11.65 |
| AT4G18600.1 | Thale cress | nucleus | 16.84 | 10.65 |
| TraesCS5D01G484800.1 | Wheat | nucleus | 17.93 | 10.3 |
| Bra013329.1-P | Field mustard | nucleus | 16.84 | 9.43 |
Protein Annotations
| Gene3D:1.20.5.340 | Gene3D:1.20.58.1570 | MapMan:20.2.2.2.4 | GO:GO:0003674 | GO:GO:0003779 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005856 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0030036 | InterPro:IPR003124 | PFscan:PS51082 | PANTHER:PTHR12902 |
| PANTHER:PTHR12902:SF1 | InterPro:SCAR/WAVE_fam | EnsemblPlantsGene:TraesCS3D01G150600 | EnsemblPlants:TraesCS3D01G150600.1 | InterPro:WH2_dom | SEG:seg |
Description
No Description!
Coordinates
chr3D:-:115025685..115032901
Molecular Weight (calculated)
140099.0 Da
IEP (calculated)
4.784
GRAVY (calculated)
-0.748
Length
1283 amino acids
Sequence
(BLAST)
(BLAST)
0001: MPLVRFEVRN EVGLGDPGLY GGAGAGKRGG VAGAAGEAEP KALLEGIAVA GLVGILRQLG DLAEFAADVF HDLHEQVITT SARGRKVLTR VQNIEAALPS
0101: LEKAVKNQKS HIHFAYVPGS DWHTQLQNEQ NHLLSSDLPR FMMDSYEECR DPPRLYLLDK FDNAGAGACL KRYSDPSYFK KSWDVMRADK TAHLQKERRS
0201: HKIKRKGSRL KEPYHGQAAS RHRNGELQRA LTAVQLTSSR QCASPSMDGR SFSEHRSTSD ARSNPDNISR SSSFSSKARL SFAEQASDTK PSVVPHENGN
0301: DKLSNIDMHK LNDASSPILL SGTRADDLGD DSRQGSLSDE MNARSPSVEW HEKTAIVMTT SSVYCDDVVM DRAENAETKH IKPVQREFDH SEMETLEQQG
0401: ALLQKAKLLL SSGLNHRDEV PSETDNYMDA LNTLESETET EVDFQTKKRG KPVHSFNAHA PQIESADNIV SLPDSSPAEF PDTSPNSRML HTFERTADFP
0501: SLSSADASDI SQHTLSGYTD IHPNEWSSVT TIPENNENDA AGDPTEISEP APQAYTATPP NERSPHANEI PESKAEVAPR DSPEISKPGL STYAVFPPNK
0601: ESVVNQIPEN NVEDASEDGT VESISCLVQE PAISFAPTSE VSPAKILPGD TTANSVISER SPQDYPGENH QEFGGCGMAE VSNSQTMPLN ESSENGSATQ
0701: HLPTHAPTSS VELSSVKLWT NAGLFGLEPS KPPVGICPGS ASQSYPETNQ SAIRTPDAVY SQTDRPSDSS TYFEHREHRN LNGKQASISE LLESEGNAEN
0801: GAETYSGTDL AGRNNLHVVS ASSFSSIAQR FLANTLQRRT SPKYNDLPMS SGRVNTDANG FDEATVNSTL APKQAVFDAS QFEKKADNGM DGLPKSSIFS
0901: SRHYSEKSSP PLEHMKISFH PMSAFETSKL NLDFSDGNLH DNVDDMMLPT FQLLPGSSVP QPGSGSESED DTFGRSYSYS SYDDLSPRLY SNSELWDQED
1001: GIGLEDHELH NDSNQIGSST TPVSSYMGFE QMNLSGEKST ISLSDIGDHN GLGSLKSHPA GELPNFDTLM STSNHQNGDA LIPHNPVNLS PDEDQMPPPP
1101: PLPPMQWRTM RQTTSLDEER DSTAKDMLKN ASSLPPVHTP VQEQYLPPCA PPFPQGNVKE VNHQKVDVIK EGSNLPNIFE IKSSLLQQIR DKPDLHKLNG
1201: HEKPKAVFND VNSLDERGEL LQQIRSKTFN LRRTNGSKTN TSSQSTESTA NSSVVAILEK ANAIRQAVAS DEGGDDDNWS DIN
0101: LEKAVKNQKS HIHFAYVPGS DWHTQLQNEQ NHLLSSDLPR FMMDSYEECR DPPRLYLLDK FDNAGAGACL KRYSDPSYFK KSWDVMRADK TAHLQKERRS
0201: HKIKRKGSRL KEPYHGQAAS RHRNGELQRA LTAVQLTSSR QCASPSMDGR SFSEHRSTSD ARSNPDNISR SSSFSSKARL SFAEQASDTK PSVVPHENGN
0301: DKLSNIDMHK LNDASSPILL SGTRADDLGD DSRQGSLSDE MNARSPSVEW HEKTAIVMTT SSVYCDDVVM DRAENAETKH IKPVQREFDH SEMETLEQQG
0401: ALLQKAKLLL SSGLNHRDEV PSETDNYMDA LNTLESETET EVDFQTKKRG KPVHSFNAHA PQIESADNIV SLPDSSPAEF PDTSPNSRML HTFERTADFP
0501: SLSSADASDI SQHTLSGYTD IHPNEWSSVT TIPENNENDA AGDPTEISEP APQAYTATPP NERSPHANEI PESKAEVAPR DSPEISKPGL STYAVFPPNK
0601: ESVVNQIPEN NVEDASEDGT VESISCLVQE PAISFAPTSE VSPAKILPGD TTANSVISER SPQDYPGENH QEFGGCGMAE VSNSQTMPLN ESSENGSATQ
0701: HLPTHAPTSS VELSSVKLWT NAGLFGLEPS KPPVGICPGS ASQSYPETNQ SAIRTPDAVY SQTDRPSDSS TYFEHREHRN LNGKQASISE LLESEGNAEN
0801: GAETYSGTDL AGRNNLHVVS ASSFSSIAQR FLANTLQRRT SPKYNDLPMS SGRVNTDANG FDEATVNSTL APKQAVFDAS QFEKKADNGM DGLPKSSIFS
0901: SRHYSEKSSP PLEHMKISFH PMSAFETSKL NLDFSDGNLH DNVDDMMLPT FQLLPGSSVP QPGSGSESED DTFGRSYSYS SYDDLSPRLY SNSELWDQED
1001: GIGLEDHELH NDSNQIGSST TPVSSYMGFE QMNLSGEKST ISLSDIGDHN GLGSLKSHPA GELPNFDTLM STSNHQNGDA LIPHNPVNLS PDEDQMPPPP
1101: PLPPMQWRTM RQTTSLDEER DSTAKDMLKN ASSLPPVHTP VQEQYLPPCA PPFPQGNVKE VNHQKVDVIK EGSNLPNIFE IKSSLLQQIR DKPDLHKLNG
1201: HEKPKAVFND VNSLDERGEL LQQIRSKTFN LRRTNGSKTN TSSQSTESTA NSSVVAILEK ANAIRQAVAS DEGGDDDNWS DIN
001: MPLVRLQVRN VYGLGQKELH TKVDREDPKA ILDDVAVSGL VGILRQLGDL TEFAAEIFHG IQEEVMITAS RSNKLKMRLK QIEAKVPTIQ KTVLAQTNHI
101: HFAYTGGLEW HPRIPNVQNH FMYDELPPFI MTPYEDCREP PRLHLLDKFD INGPGSCLKR YSDPTHFKRA SRASKPSEIK KKKSIQRGRD ISRLASVANQ
201: SDRKTCTSLS FSGRTSTSKT ASTIEIESKS DLQEHRSFSF DSRSGGEKPK RVSSSSRFTP GSRTIASVLS ESESESDSPS QDLTARGSSS VSWHEKAEIV
301: ECNVLQCATD EAPEVMETNF VLDAEPVSRL KEHSAVEAVQ DIKPKELEMD NEDETESEGD DFVDALYTID SESENDEAFQ ATKEVQKNLY NDITEQETEK
401: ISNNFSVDET KCAATSELHL SSSPVYKSDE LIHQDPWAAS EISSGTHSYS NGFSNPLYDI SGIQEHQESE EVESSCDTES IKTWTNGNLL GLKPSKPKII
501: AETIPEIVED IDSETFQEHL REDYKAPFDW FTSSPPLDHM KISFKSSETL PSSELQLKLP DEYTFSSFQL VPETIATSLP DSDSDKDTFC RSSSYISDNS
601: DNDNRSVSMS EQQWEEESEG IRESKRQQEL YDSFHRVNAE ASSLPVPFPK IETTNGCLVE NVSYLQNPAE PLPPPLPPLQ WMVSKIPSAG FEDNNKQSLK
701: DALTQAFEKN NNSLTAVKKK EPHIVTVSDP KLVTKVHLKN NVRDYKQSHG NTNETEAGDF LHQIRTKQFN LRRVVRTKTS SSETTMNTNI SVILEKANSI
801: RQAVASDDGE GESDTWSDSD T
101: HFAYTGGLEW HPRIPNVQNH FMYDELPPFI MTPYEDCREP PRLHLLDKFD INGPGSCLKR YSDPTHFKRA SRASKPSEIK KKKSIQRGRD ISRLASVANQ
201: SDRKTCTSLS FSGRTSTSKT ASTIEIESKS DLQEHRSFSF DSRSGGEKPK RVSSSSRFTP GSRTIASVLS ESESESDSPS QDLTARGSSS VSWHEKAEIV
301: ECNVLQCATD EAPEVMETNF VLDAEPVSRL KEHSAVEAVQ DIKPKELEMD NEDETESEGD DFVDALYTID SESENDEAFQ ATKEVQKNLY NDITEQETEK
401: ISNNFSVDET KCAATSELHL SSSPVYKSDE LIHQDPWAAS EISSGTHSYS NGFSNPLYDI SGIQEHQESE EVESSCDTES IKTWTNGNLL GLKPSKPKII
501: AETIPEIVED IDSETFQEHL REDYKAPFDW FTSSPPLDHM KISFKSSETL PSSELQLKLP DEYTFSSFQL VPETIATSLP DSDSDKDTFC RSSSYISDNS
601: DNDNRSVSMS EQQWEEESEG IRESKRQQEL YDSFHRVNAE ASSLPVPFPK IETTNGCLVE NVSYLQNPAE PLPPPLPPLQ WMVSKIPSAG FEDNNKQSLK
701: DALTQAFEKN NNSLTAVKKK EPHIVTVSDP KLVTKVHLKN NVRDYKQSHG NTNETEAGDF LHQIRTKQFN LRRVVRTKTS SSETTMNTNI SVILEKANSI
801: RQAVASDDGE GESDTWSDSD T
Arabidopsis Description
SCAR1Protein SCAR1 [Source:UniProtKB/Swiss-Prot;Acc:Q6AWX6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.