Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY17225 | Canola | nucleus | 57.86 | 58.57 |
| Bra005450.1-P | Field mustard | nucleus | 57.0 | 52.7 |
| CDY63143 | Canola | nucleus | 47.87 | 44.26 |
| AT1G29170.1 | Thale cress | nucleus | 46.89 | 37.75 |
| Zm00001d025836_P001 | Maize | cytosol | 5.24 | 34.4 |
| Zm00001d025835_P001 | Maize | cytosol | 5.24 | 34.4 |
| Zm00001d032131_P001 | Maize | cytosol, extracellular, plastid | 5.36 | 30.56 |
| KRH42863 | Soybean | nucleus | 38.37 | 23.6 |
| TraesCS3A01G134300.3 | Wheat | cytosol | 33.01 | 21.12 |
| TraesCS3B01G168100.1 | Wheat | cytosol | 33.01 | 21.11 |
| Solyc02g076840.2.1 | Tomato | nucleus | 33.37 | 21.06 |
| TraesCS3D01G150600.1 | Wheat | cytosol | 32.64 | 20.89 |
| GSMUA_AchrUn_... | Banana | cytosol | 28.87 | 20.73 |
| HORVU3Hr1G029210.3 | Barley | cytosol | 32.64 | 20.71 |
| GSMUA_Achr2P15470_001 | Banana | nucleus | 26.67 | 20.09 |
| GSMUA_Achr10P... | Banana | cytosol | 28.14 | 19.44 |
| Os01t0208600-01 | Rice | cytosol | 31.43 | 19.34 |
| KXG31590 | Sorghum | cytosol | 30.57 | 18.29 |
| Zm00001d008906_P003 | Maize | cytosol | 28.87 | 16.99 |
| VIT_08s0058g00770.t01 | Wine grape | cytosol | 2.8 | 16.2 |
| AT5G01730.1 | Thale cress | cytosol | 18.27 | 12.82 |
| AT2G38440.1 | Thale cress | cytosol | 20.71 | 12.15 |
| AT4G18600.1 | Thale cress | nucleus | 23.75 | 9.62 |
Protein Annotations
| Gene3D:1.20.5.340 | Gene3D:1.20.58.1570 | MapMan:20.2.2.2.4 | EntrezGene:817976 | ProteinID:AAB67636.1 | ProteinID:AEC08924.1 |
| ProteinID:AEC08925.1 | EMBL:AK221958 | ProteinID:ANM62861.1 | ProteinID:ANM62862.1 | ArrayExpress:AT2G34150 | EnsemblPlantsGene:AT2G34150 |
| RefSeq:AT2G34150 | TAIR:AT2G34150 | RefSeq:AT2G34150-TAIR-G | EnsemblPlants:AT2G34150.2 | TAIR:AT2G34150.2 | Symbol:ATRANGAP2 |
| EMBL:AY743926 | Unigene:At.37845 | EMBL:BK005566 | EMBL:BT002929 | GO:GO:0003674 | GO:GO:0003779 |
| GO:GO:0003785 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005856 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 |
| GO:GO:0030036 | GO:GO:0031209 | GO:GO:0043229 | GO:GO:0051127 | GO:GO:0071944 | RefSeq:NP_001031474.1 |
| RefSeq:NP_001324987.1 | RefSeq:NP_001324988.1 | RefSeq:NP_850225.1 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR12902 | PANTHER:PTHR12902:SF1 | UniProt:Q6AWX6 |
| InterPro:SCAR/WAVE_fam | UniParc:UPI00001623BD | Symbol:WAVE1 | SEG:seg | : | : |
Description
SCAR1Protein SCAR1 [Source:UniProtKB/Swiss-Prot;Acc:Q6AWX6]
Coordinates
chr2:-:14419263..14423471
Molecular Weight (calculated)
92094.4 Da
IEP (calculated)
4.692
GRAVY (calculated)
-0.747
Length
821 amino acids
Sequence
(BLAST)
(BLAST)
001: MPLVRLQVRN VYGLGQKELH TKVDREDPKA ILDDVAVSGL VGILRQLGDL TEFAAEIFHG IQEEVMITAS RSNKLKMRLK QIEAKVPTIQ KTVLAQTNHI
101: HFAYTGGLEW HPRIPNVQNH FMYDELPPFI MTPYEDCREP PRLHLLDKFD INGPGSCLKR YSDPTHFKRA SRASKPSEIK KKKSIQRGRD ISRLASVANQ
201: SDRKTCTSLS FSGRTSTSKT ASTIEIESKS DLQEHRSFSF DSRSGGEKPK RVSSSSRFTP GSRTIASVLS ESESESDSPS QDLTARGSSS VSWHEKAEIV
301: ECNVLQCATD EAPEVMETNF VLDAEPVSRL KEHSAVEAVQ DIKPKELEMD NEDETESEGD DFVDALYTID SESENDEAFQ ATKEVQKNLY NDITEQETEK
401: ISNNFSVDET KCAATSELHL SSSPVYKSDE LIHQDPWAAS EISSGTHSYS NGFSNPLYDI SGIQEHQESE EVESSCDTES IKTWTNGNLL GLKPSKPKII
501: AETIPEIVED IDSETFQEHL REDYKAPFDW FTSSPPLDHM KISFKSSETL PSSELQLKLP DEYTFSSFQL VPETIATSLP DSDSDKDTFC RSSSYISDNS
601: DNDNRSVSMS EQQWEEESEG IRESKRQQEL YDSFHRVNAE ASSLPVPFPK IETTNGCLVE NVSYLQNPAE PLPPPLPPLQ WMVSKIPSAG FEDNNKQSLK
701: DALTQAFEKN NNSLTAVKKK EPHIVTVSDP KLVTKVHLKN NVRDYKQSHG NTNETEAGDF LHQIRTKQFN LRRVVRTKTS SSETTMNTNI SVILEKANSI
801: RQAVASDDGE GESDTWSDSD T
101: HFAYTGGLEW HPRIPNVQNH FMYDELPPFI MTPYEDCREP PRLHLLDKFD INGPGSCLKR YSDPTHFKRA SRASKPSEIK KKKSIQRGRD ISRLASVANQ
201: SDRKTCTSLS FSGRTSTSKT ASTIEIESKS DLQEHRSFSF DSRSGGEKPK RVSSSSRFTP GSRTIASVLS ESESESDSPS QDLTARGSSS VSWHEKAEIV
301: ECNVLQCATD EAPEVMETNF VLDAEPVSRL KEHSAVEAVQ DIKPKELEMD NEDETESEGD DFVDALYTID SESENDEAFQ ATKEVQKNLY NDITEQETEK
401: ISNNFSVDET KCAATSELHL SSSPVYKSDE LIHQDPWAAS EISSGTHSYS NGFSNPLYDI SGIQEHQESE EVESSCDTES IKTWTNGNLL GLKPSKPKII
501: AETIPEIVED IDSETFQEHL REDYKAPFDW FTSSPPLDHM KISFKSSETL PSSELQLKLP DEYTFSSFQL VPETIATSLP DSDSDKDTFC RSSSYISDNS
601: DNDNRSVSMS EQQWEEESEG IRESKRQQEL YDSFHRVNAE ASSLPVPFPK IETTNGCLVE NVSYLQNPAE PLPPPLPPLQ WMVSKIPSAG FEDNNKQSLK
701: DALTQAFEKN NNSLTAVKKK EPHIVTVSDP KLVTKVHLKN NVRDYKQSHG NTNETEAGDF LHQIRTKQFN LRRVVRTKTS SSETTMNTNI SVILEKANSI
801: RQAVASDDGE GESDTWSDSD T
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.