Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d008906_P003 | Maize | cytosol | 73.83 | 72.62 |
| TraesCS3B01G168100.1 | Wheat | cytosol | 57.65 | 61.6 |
| TraesCS3A01G134300.3 | Wheat | cytosol | 56.92 | 60.87 |
| TraesCS3D01G150600.1 | Wheat | cytosol | 56.34 | 60.25 |
| HORVU3Hr1G029210.3 | Barley | cytosol | 56.27 | 59.66 |
| Os01t0208600-01 | Rice | cytosol | 56.49 | 58.1 |
| VIT_10s0003g01270.t01 | Wine grape | cytosol | 23.54 | 34.4 |
| GSMUA_Achr10P... | Banana | cytosol | 28.64 | 33.08 |
| GSMUA_AchrUn_... | Banana | cytosol | 27.48 | 32.98 |
| GSMUA_Achr2P15470_001 | Banana | nucleus | 25.58 | 32.2 |
| CDY17225 | Canola | nucleus | 18.08 | 30.58 |
| AT2G34150.2 | Thale cress | nucleus | 18.29 | 30.57 |
| CDY43322 | Canola | nucleus | 19.46 | 28.02 |
| Bra010847.1-P | Field mustard | nucleus | 19.46 | 27.81 |
| CDX90172 | Canola | nucleus | 19.46 | 27.81 |
| Bra005450.1-P | Field mustard | nucleus | 17.49 | 27.03 |
| AT1G29170.1 | Thale cress | nucleus | 20.04 | 26.96 |
| CDY63143 | Canola | nucleus | 16.47 | 25.45 |
| KRH42863 | Soybean | nucleus | 23.83 | 24.49 |
| CDX78876 | Canola | nucleus | 12.32 | 23.28 |
| Solyc02g076840.2.1 | Tomato | nucleus | 21.79 | 22.98 |
| KRH58965 | Soybean | nucleus | 14.8 | 20.51 |
| VIT_08s0058g00770.t01 | Wine grape | cytosol | 1.75 | 16.9 |
| EER92402 | Sorghum | nucleus | 15.31 | 16.14 |
| KXG37022 | Sorghum | nucleus | 10.06 | 15.7 |
| CDX78875 | Canola | extracellular, vacuole | 9.18 | 15.38 |
| CDX99451 | Canola | nucleus | 15.96 | 11.49 |
| EER93209 | Sorghum | cytosol | 17.06 | 11.1 |
| AT4G18600.1 | Thale cress | nucleus | 16.04 | 10.85 |
| Bra013329.1-P | Field mustard | nucleus | 15.96 | 9.56 |
Protein Annotations
| Gene3D:1.20.5.340 | Gene3D:1.20.58.1570 | MapMan:20.2.2.2.4 | UniProt:A0A1B6Q120 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003779 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005856 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0030036 | InterPro:IPR003124 |
| EnsemblPlants:KXG31590 | ProteinID:KXG31590 | ProteinID:KXG31590.1 | PFscan:PS51082 | PANTHER:PTHR12902 | PANTHER:PTHR12902:SF1 |
| InterPro:SCAR/WAVE_fam | EnsemblPlantsGene:SORBI_3003G023400 | UniParc:UPI00081AC57E | InterPro:WH2_dom | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr3:-:2011568..2017976
Molecular Weight (calculated)
148130.0 Da
IEP (calculated)
4.493
GRAVY (calculated)
-0.598
Length
1372 amino acids
Sequence
(BLAST)
(BLAST)
0001: MPLVRFEVRN EVGLGDPGLY GGGAAAAGAA AVAGNRGATA SAAAAGEEEP KALLEGVAVA GLVGILRQLG DLAEFAADVF HDLHEQVIAT SARGRKVLTR
0101: VQNIEAALPS LEKAVKNQKS HIHFAYVPGS DWHTQLQNEQ NHLLASDLPR FMMDSYEECR DPPRLYLLDK FDTAGAGACV KRYSDPSYFK KAWDMTRADK
0201: TANLQREKRS QKIKRKGSRL REPYHGQATS RHRGTEFQRS LTAGQLVNSR QFASPSNDGQ SISEHRSTPD ARSNPDNISR SSSLSSKTQL SSVEQAFDAK
0301: PSAVPHENGH GKSLDTKLQK PGGLPSRILL NGTSVDDHSD YLKHCSQAGD MVPRSPHVKW DEKAAIIMST SSVYCDDIVM DKAEDAEPTC ISSVQKETGH
0401: KVMDALEQQD ALLKKTKSLL VPSVLNHHDD IPGEADNYMD ALNTLESETE TESEFQTKNQ GVPAPSFNAE APQVGAIDNI VPQCPDSYVA DFTDTCQESG
0501: ILCASERAID FPSLSNADSL EVSQLEVSDY TSVSPYRESS VTTNIHESGA EGAREDPCEI IEPLQVHSAI LPNDGSPVCN EIPKSKPDDD LGYFPEIPQP
0601: GFSTCLVIPS NKESAVANEN LESDAESVGD LIDGNNFVSG PNIANMVVDE VGFKMAPADK SSPGDHSDDS CVIPESRTQD YAGKSHEGVG DCGVIGVSEL
0701: CSEPLNKSSG NICATQDVPT NTSTMSAGAS EVSSSWSEPA TQGVPANAST TSTVVPSVKL WTNAGLFGLE PSKPPVFGAQ DGPREDTPPG FKEAQPVHST
0801: EFTELHCSKP TESAVVDVPN GNTTITSSFV EKLVGIRPGS ANLNSSGANQ SAARIPDPIH SHADGHSDFS SSFEHNNMSG KHTSISELLE SEGSAETGTG
0901: IYSTDMSNNV HMVSASSFSS IAQRFLANTL QRRTSSKYTD LPMSSERANA DTSAKDESTI NPVETVFAEE TKFENKTENG MDGLTKSSIF SSRHYSEKSS
1001: PPLEYMKISF HPMSAFETSK LNLDFCDGNL HEISDDMMLP TFQLLSESSI PQPGSGSESE DDTFGRSYSY SSYDDLSPRL YSNSEAWDQE DGVGLEEHEL
1101: YDDSNPIGSS TAPLSSYMGF EQMNLSGMKS DDSLANVGDQ NVIGTLESSC TVEELPNFDT LMSRSDDQNG ETSIPHNPVN LLPDEDQLPP PPPLPPMQWR
1201: MTRQTTSLEE ETCITAKDML RKTSSLPHIH TSAQEEHLPP TAPLDLQGNA KEVDVQKTGG VREITNPPSI IDIKSSLLQQ IRDKTEQLKL NNGHERSKKA
1301: VGGDIKSLDE REELLQQIRS KTFNLRRTNA SKTDGSSQST ANSNVVAILE KANAIRQAVA SDGGDDDTWS DI
0101: VQNIEAALPS LEKAVKNQKS HIHFAYVPGS DWHTQLQNEQ NHLLASDLPR FMMDSYEECR DPPRLYLLDK FDTAGAGACV KRYSDPSYFK KAWDMTRADK
0201: TANLQREKRS QKIKRKGSRL REPYHGQATS RHRGTEFQRS LTAGQLVNSR QFASPSNDGQ SISEHRSTPD ARSNPDNISR SSSLSSKTQL SSVEQAFDAK
0301: PSAVPHENGH GKSLDTKLQK PGGLPSRILL NGTSVDDHSD YLKHCSQAGD MVPRSPHVKW DEKAAIIMST SSVYCDDIVM DKAEDAEPTC ISSVQKETGH
0401: KVMDALEQQD ALLKKTKSLL VPSVLNHHDD IPGEADNYMD ALNTLESETE TESEFQTKNQ GVPAPSFNAE APQVGAIDNI VPQCPDSYVA DFTDTCQESG
0501: ILCASERAID FPSLSNADSL EVSQLEVSDY TSVSPYRESS VTTNIHESGA EGAREDPCEI IEPLQVHSAI LPNDGSPVCN EIPKSKPDDD LGYFPEIPQP
0601: GFSTCLVIPS NKESAVANEN LESDAESVGD LIDGNNFVSG PNIANMVVDE VGFKMAPADK SSPGDHSDDS CVIPESRTQD YAGKSHEGVG DCGVIGVSEL
0701: CSEPLNKSSG NICATQDVPT NTSTMSAGAS EVSSSWSEPA TQGVPANAST TSTVVPSVKL WTNAGLFGLE PSKPPVFGAQ DGPREDTPPG FKEAQPVHST
0801: EFTELHCSKP TESAVVDVPN GNTTITSSFV EKLVGIRPGS ANLNSSGANQ SAARIPDPIH SHADGHSDFS SSFEHNNMSG KHTSISELLE SEGSAETGTG
0901: IYSTDMSNNV HMVSASSFSS IAQRFLANTL QRRTSSKYTD LPMSSERANA DTSAKDESTI NPVETVFAEE TKFENKTENG MDGLTKSSIF SSRHYSEKSS
1001: PPLEYMKISF HPMSAFETSK LNLDFCDGNL HEISDDMMLP TFQLLSESSI PQPGSGSESE DDTFGRSYSY SSYDDLSPRL YSNSEAWDQE DGVGLEEHEL
1101: YDDSNPIGSS TAPLSSYMGF EQMNLSGMKS DDSLANVGDQ NVIGTLESSC TVEELPNFDT LMSRSDDQNG ETSIPHNPVN LLPDEDQLPP PPPLPPMQWR
1201: MTRQTTSLEE ETCITAKDML RKTSSLPHIH TSAQEEHLPP TAPLDLQGNA KEVDVQKTGG VREITNPPSI IDIKSSLLQQ IRDKTEQLKL NNGHERSKKA
1301: VGGDIKSLDE REELLQQIRS KTFNLRRTNA SKTDGSSQST ANSNVVAILE KANAIRQAVA SDGGDDDTWS DI
0001: MPLTRYQSRN EYGLADPDLY QAADKDDPEA LLEGVAMAGL VGILRQLGDL AEFAAEMFHD LHEEVMATAS RSHGLMARVQ QLEAEFPSIE KALLCQTDHS
0101: PFFSNKGVEW HPNLQLEQSV VTSGDLPRCV MDSYEECRGP PRLFLLDKFD ISGAGACLKR YTDPSFVRLE TSSYEESWDD IQREKKSQKA KRRASQWRNG
0201: GTPENALSSH AKLHELFLEE HLEAHHSDPA RVVKLKTRKL DGCSLISKSG ESYMEKFVQT RVDSKISYEI ITQNPGLLTW NMDSARDVVT DIPEISMVGA
0301: MDKSHGGSRA EVSFPSEQEN VANVNMNGGF IEKDIETVPE STYNEVRGTT ITQDSQTVLN GKPGFFQQRS YSEDLTSEAD NYVDAPATME SETETDDECR
0401: PKSRSDTLKD GNHHIYSDAV EERMEDPPQF SFSHSNGNTP VSENGRSSFG KKSTSYSYSD TASISIDDQS DGEKLSGCLP STSSFKSELV DSMSHVTPEA
0501: NKVSHDLNVQ ESVSSSNVDG QTSLSSNGTC SSPRPVSQND QSCSLTVQSL ASEVVETSPE LVRLDLMKGG NDGRKVDPFD SSKSCASFDA KNSDLPSETS
0601: SISSTSEGSR CDSTIEKNCM VASNLVNSGT SPQAFVDSQT GKQLPIADTD FETNSIVACS EVLANSGSDP EERDGRCLTG KLVPCSAGVG MEVSPDTPSK
0701: VCGPSSADGI HLKDTLDDET DCVSVTNVVV DVDSKNSVAD VGSQSSVADI DSQSSVAEIS DEHSCAFGNT ADVSVSESHE DTLENGMSVP SDFNSGVEKL
0801: AGDASPTCSK CDDHISHEGF HDLSGLDNAT TDIVPNVELD VSDNDNDTSS GGVNHAVSLS STRGKGSLPW ISTNTYQSSS DAGEIFHDTV VESDGTLLED
0901: NNPESEIKMH KSPLEVSSEG LSTEPDNKDV ESIESTSPKP SLDQRNRDTE TKSPGESILD DNCIDSTQVY NLNLLESEAI DQAVREQTSY ASHEVADEEL
1001: LQSNVFRGLE FEPQSAGLEF APQSAGIELN RPKQELNLDP TFPSFGFIPE TIPPNPEDMP PLPPMQWLIG KVPHSFPTFM GESVETSSSA LSAAPPIGSS
1101: LNVQIGSPPS ELSVSLGSDE SERLPGGFVH NASEKPLQSS IQFPTMSTDL NSQYDSSELP TIPYQECIED FGSEENNLLA DHAAQNHELV YSQASSLQLP
1201: QVKHEDFKDD ADVHESQSSS DDHHCPETKS LTPTQSTKVE DKGHSVPDAS NAETAESSNT SVQKINPVSV GDAMWPVSCF SVAPTLDTYK TEVVPTVRLP
1301: RPRSPLVDAV AAHDRRKMKK VSEMVHPPIK SKQDDKDSLL AQIRNKSVNL KPAVTTRPSI QTGPRTDLRV AAILEKANTI RMAMAGSDED EDSDSWSDS
0101: PFFSNKGVEW HPNLQLEQSV VTSGDLPRCV MDSYEECRGP PRLFLLDKFD ISGAGACLKR YTDPSFVRLE TSSYEESWDD IQREKKSQKA KRRASQWRNG
0201: GTPENALSSH AKLHELFLEE HLEAHHSDPA RVVKLKTRKL DGCSLISKSG ESYMEKFVQT RVDSKISYEI ITQNPGLLTW NMDSARDVVT DIPEISMVGA
0301: MDKSHGGSRA EVSFPSEQEN VANVNMNGGF IEKDIETVPE STYNEVRGTT ITQDSQTVLN GKPGFFQQRS YSEDLTSEAD NYVDAPATME SETETDDECR
0401: PKSRSDTLKD GNHHIYSDAV EERMEDPPQF SFSHSNGNTP VSENGRSSFG KKSTSYSYSD TASISIDDQS DGEKLSGCLP STSSFKSELV DSMSHVTPEA
0501: NKVSHDLNVQ ESVSSSNVDG QTSLSSNGTC SSPRPVSQND QSCSLTVQSL ASEVVETSPE LVRLDLMKGG NDGRKVDPFD SSKSCASFDA KNSDLPSETS
0601: SISSTSEGSR CDSTIEKNCM VASNLVNSGT SPQAFVDSQT GKQLPIADTD FETNSIVACS EVLANSGSDP EERDGRCLTG KLVPCSAGVG MEVSPDTPSK
0701: VCGPSSADGI HLKDTLDDET DCVSVTNVVV DVDSKNSVAD VGSQSSVADI DSQSSVAEIS DEHSCAFGNT ADVSVSESHE DTLENGMSVP SDFNSGVEKL
0801: AGDASPTCSK CDDHISHEGF HDLSGLDNAT TDIVPNVELD VSDNDNDTSS GGVNHAVSLS STRGKGSLPW ISTNTYQSSS DAGEIFHDTV VESDGTLLED
0901: NNPESEIKMH KSPLEVSSEG LSTEPDNKDV ESIESTSPKP SLDQRNRDTE TKSPGESILD DNCIDSTQVY NLNLLESEAI DQAVREQTSY ASHEVADEEL
1001: LQSNVFRGLE FEPQSAGLEF APQSAGIELN RPKQELNLDP TFPSFGFIPE TIPPNPEDMP PLPPMQWLIG KVPHSFPTFM GESVETSSSA LSAAPPIGSS
1101: LNVQIGSPPS ELSVSLGSDE SERLPGGFVH NASEKPLQSS IQFPTMSTDL NSQYDSSELP TIPYQECIED FGSEENNLLA DHAAQNHELV YSQASSLQLP
1201: QVKHEDFKDD ADVHESQSSS DDHHCPETKS LTPTQSTKVE DKGHSVPDAS NAETAESSNT SVQKINPVSV GDAMWPVSCF SVAPTLDTYK TEVVPTVRLP
1301: RPRSPLVDAV AAHDRRKMKK VSEMVHPPIK SKQDDKDSLL AQIRNKSVNL KPAVTTRPSI QTGPRTDLRV AAILEKANTI RMAMAGSDED EDSDSWSDS
Arabidopsis Description
SCAR2Protein SCAR2 [Source:UniProtKB/Swiss-Prot;Acc:Q5XPJ9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.