CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022570_P001	Maize	cytosol	22.41	30.59
TraesCS2A01G090500.1	Wheat	nucleus	12.17	26.42
HORVU2Hr1G014860.1	Barley	cytosol	11.26	25.26
TraesCS2D01G088200.1	Wheat	nucleus	11.04	24.19
TraesCS2B01G106000.1	Wheat	cytosol	9.9	23.77
HORVU3Hr1G028090.1	Barley	cytosol, nucleus	8.08	23.36
Os07t0691700-01	Rice	nucleus	19.0	19.72
GSMUA_Achr5P29520_001	Banana	cytosol	3.75	18.33
EER92402	Sorghum	nucleus	16.95	11.45
KXG31590	Sorghum	cytosol	15.7	10.06
EER93209	Sorghum	cytosol	14.68	6.12
GSMUA_Achr5P14360_001	Banana	cytosol, nucleus	7.05	3.59

Protein Annotations

EnsemblPlants:KXG37022	EnsemblPlantsGene:SORBI_3002G428000	Gene3D:1.20.5.340	Gene3D:1.20.58.1570	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005856	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0030036
InterPro:SCAR/WAVE_fam	PANTHER:PTHR12902	PANTHER:PTHR12902:SF10	ProteinID:KXG37022	ProteinID:KXG37022.1	SEG:seg
UniParc:UPI00081AD13E	UniProt:A0A1B6QGH2	MapMan:20.2.2.2.4	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:77443269..77447775

Molecular Weight (calculated)

95504.5 Da

IEP (calculated)

7.207

GRAVY (calculated)

-0.656

Length

879 amino acids

Sequence
(BLAST)

001: MGLSSRCGCR CECVTSTTHG DVVRNRSNRN NNDAPDAVLE GLAMAGLVAI LRQLGDLAEL AAEVFDDMQH QVMAASARGR RLAVRAKRLL ETDLYLPPTT
101: STHNSAAAAL SLTIATSSSG RLGCRAHPRR GGGGGGGGGT PPIMMPRLVV QRIRRCRGPP RLSLLDKFDA AGDGACLKRY TDPSFFFRTH SARLEQGTLG
201: VRANRGPYLK SMSMETSRPK FQTAFNSEPP ESADTVTDCK SESETERDAS EAPSPGFLSM LRQLKQHRHR HRQAAGAGSL FRVQQTVDRV QSSPQLDMEK
301: KLQGSGTAQP SPSPSELERT SSFEAWLSPD ARRFPTTAAA AATHHHEHEE IITQEPPHPH GASATACSGS VSDVVTTSIG AALSSSTMLK AKQNSADAEI
401: PCSKSSRRYK DSVEMIASRV SSLPRKLFIN IKHHNDCSRS DRAGTTNLRI SQATGTGDCS PELEAIPTPR EAFLPTLVHS DPVYSSMHSL LLPENDKCYS
501: YLQHHESIPC NVSVDAERHH QQEDPSTDRC SNSNSNSSTP ETCTTPDSRN LLLPGSLVLK RASALPENPC SEDAKLDTTP PLPPIPPMQW LSERVHTGTR
601: TRAPSPKHRA LWKKSLEVTE MIQAIRQAHS HSIQTSPVDT EETLVSNEHT SANASHRDEM KCSESEETGH PQPFRAREDA VQASEGNVLK AGEFPVPAIL
701: SDEAGSEIYL RTQAQADTCF QQQGRQQFGS SGHSDHGSTE KRSEEHEDLQ NESVFFSAVQ ELANMSPPPS VPRPKYPLLD AGSHGRIMLR NGPSPIHPSR
801: NILDSRSLLI KQIKDIAMDG NPSFKLKSVS GASSPQSSVT GSPTNSKVAT ILQRLDDIRK AHANNNEVHS EESWSDGSE

Best Arabidopsis Sequence Match ( AT2G38440.1 )
(BLAST)

0001: MPLTRYQSRN EYGLADPDLY QAADKDDPEA LLEGVAMAGL VGILRQLGDL AEFAAEMFHD LHEEVMATAS RSHGLMARVQ QLEAEFPSIE KALLCQTDHS
0101: PFFSNKGVEW HPNLQLEQSV VTSGDLPRCV MDSYEECRGP PRLFLLDKFD ISGAGACLKR YTDPSFVRLE TSSYEESWDD IQREKKSQKA KRRASQWRNG
0201: GTPENALSSH AKLHELFLEE HLEAHHSDPA RVVKLKTRKL DGCSLISKSG ESYMEKFVQT RVDSKISYEI ITQNPGLLTW NMDSARDVVT DIPEISMVGA
0301: MDKSHGGSRA EVSFPSEQEN VANVNMNGGF IEKDIETVPE STYNEVRGTT ITQDSQTVLN GKPGFFQQRS YSEDLTSEAD NYVDAPATME SETETDDECR
0401: PKSRSDTLKD GNHHIYSDAV EERMEDPPQF SFSHSNGNTP VSENGRSSFG KKSTSYSYSD TASISIDDQS DGEKLSGCLP STSSFKSELV DSMSHVTPEA
0501: NKVSHDLNVQ ESVSSSNVDG QTSLSSNGTC SSPRPVSQND QSCSLTVQSL ASEVVETSPE LVRLDLMKGG NDGRKVDPFD SSKSCASFDA KNSDLPSETS
0601: SISSTSEGSR CDSTIEKNCM VASNLVNSGT SPQAFVDSQT GKQLPIADTD FETNSIVACS EVLANSGSDP EERDGRCLTG KLVPCSAGVG MEVSPDTPSK
0701: VCGPSSADGI HLKDTLDDET DCVSVTNVVV DVDSKNSVAD VGSQSSVADI DSQSSVAEIS DEHSCAFGNT ADVSVSESHE DTLENGMSVP SDFNSGVEKL
0801: AGDASPTCSK CDDHISHEGF HDLSGLDNAT TDIVPNVELD VSDNDNDTSS GGVNHAVSLS STRGKGSLPW ISTNTYQSSS DAGEIFHDTV VESDGTLLED
0901: NNPESEIKMH KSPLEVSSEG LSTEPDNKDV ESIESTSPKP SLDQRNRDTE TKSPGESILD DNCIDSTQVY NLNLLESEAI DQAVREQTSY ASHEVADEEL
1001: LQSNVFRGLE FEPQSAGLEF APQSAGIELN RPKQELNLDP TFPSFGFIPE TIPPNPEDMP PLPPMQWLIG KVPHSFPTFM GESVETSSSA LSAAPPIGSS
1101: LNVQIGSPPS ELSVSLGSDE SERLPGGFVH NASEKPLQSS IQFPTMSTDL NSQYDSSELP TIPYQECIED FGSEENNLLA DHAAQNHELV YSQASSLQLP
1201: QVKHEDFKDD ADVHESQSSS DDHHCPETKS LTPTQSTKVE DKGHSVPDAS NAETAESSNT SVQKINPVSV GDAMWPVSCF SVAPTLDTYK TEVVPTVRLP
1301: RPRSPLVDAV AAHDRRKMKK VSEMVHPPIK SKQDDKDSLL AQIRNKSVNL KPAVTTRPSI QTGPRTDLRV AAILEKANTI RMAMAGSDED EDSDSWSDS

Arabidopsis Description

SCAR2Protein SCAR2 [Source:UniProtKB/Swiss-Prot;Acc:Q5XPJ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.