Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | cytosol | 56.57 | 58.79 |
| VIT_10s0003g01270.t01 | Wine grape | cytosol | 28.54 | 36.1 |
| GSMUA_Achr2P15470_001 | Banana | nucleus | 32.66 | 35.6 |
| GSMUA_Achr5P29540_001 | Banana | cytosol | 11.62 | 32.94 |
| TraesCS3D01G150600.1 | Wheat | cytosol | 33.33 | 30.87 |
| TraesCS3B01G168100.1 | Wheat | cytosol | 33.33 | 30.84 |
| TraesCS3A01G134300.3 | Wheat | cytosol | 33.08 | 30.63 |
| HORVU3Hr1G029210.3 | Barley | cytosol | 33.0 | 30.29 |
| Os01t0208600-01 | Rice | cytosol | 33.08 | 29.46 |
| KXG31590 | Sorghum | cytosol | 33.08 | 28.64 |
| AT2G34150.2 | Thale cress | nucleus | 19.44 | 28.14 |
| GSMUA_Achr5P29520_001 | Banana | cytosol | 4.21 | 27.78 |
| CDY17225 | Canola | nucleus | 18.6 | 27.25 |
| Bra010847.1-P | Field mustard | nucleus | 21.63 | 26.77 |
| CDX90172 | Canola | nucleus | 21.63 | 26.77 |
| Zm00001d008906_P003 | Maize | cytosol | 30.72 | 26.16 |
| CDY43322 | Canola | nucleus | 20.79 | 25.92 |
| AT1G29170.1 | Thale cress | nucleus | 21.72 | 25.29 |
| CDY63143 | Canola | nucleus | 18.52 | 24.77 |
| Bra005450.1-P | Field mustard | nucleus | 18.35 | 24.55 |
| KRH42863 | Soybean | nucleus | 26.52 | 23.6 |
| CDX78876 | Canola | nucleus | 14.06 | 23.0 |
| Solyc02g076840.2.1 | Tomato | nucleus | 24.75 | 22.6 |
| KRH58965 | Soybean | nucleus | 16.33 | 19.6 |
| GSMUA_Achr5P14370_001 | Banana | cytosol | 13.89 | 19.46 |
| VIT_08s0058g00770.t01 | Wine grape | cytosol | 2.19 | 18.31 |
| GSMUA_Achr9P04670_001 | Banana | cytosol | 17.34 | 16.49 |
| CDX78875 | Canola | extracellular, vacuole | 9.68 | 14.04 |
| GSMUA_Achr6P32700_001 | Banana | cytosol | 16.41 | 13.23 |
| CDX99451 | Canola | nucleus | 17.51 | 10.91 |
| AT4G18600.1 | Thale cress | nucleus | 17.17 | 10.06 |
| Bra013329.1-P | Field mustard | nucleus | 17.17 | 8.9 |
| GSMUA_Achr5P14360_001 | Banana | cytosol, nucleus | 6.57 | 4.52 |
Protein Annotations
| Gene3D:1.20.5.340 | Gene3D:1.20.58.1570 | MapMan:20.2.2.2.4 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005856 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0030036 | EnsemblPlantsGene:GSMUA_Achr10G00970_001 |
| EnsemblPlants:GSMUA_Achr10P00970_001 | EnsemblPlants:GSMUA_Achr10T00970_001 | UniProt:M0REC4 | PANTHER:PTHR12902 | PANTHER:PTHR12902:SF12 | InterPro:SCAR/WAVE_fam |
| UniParc:UPI000294B044 | SEG:seg | : | : | : | : |
Description
Putative SCAR-like protein 2 [Source:GMGC_GENE;Acc:GSMUA_Achr10G00970_001]
Coordinates
chr10:+:1649929..1659056
Molecular Weight (calculated)
132367.0 Da
IEP (calculated)
5.050
GRAVY (calculated)
-0.713
Length
1188 amino acids
Sequence
(BLAST)
(BLAST)
0001: MPLVRLELRN EYGLGDPELY RGGFRKEEPK AILDGVAVSG LVGILRQLGD LAEFAADVFH DLHEQITATA VRGRQMMTRV QNIESTVPSI EKAFGKQTSY
0101: VHFAYVAGSD WHARIRDEQS IVLSTELPRF MMDSYEECRD PPRLFLLDKF DHAGTGACLK RYSDPPYFKR VWTASQMENS ENFQKEKKVH KTKRKGCLPH
0201: GQNQIQTRSR PRHGEVKHAV YISHHDSSGI RFASPSIDGQ RFSAVNVSSP DMRLNLEFLS RSTSFASKTR ENYAEQTSYV NPQGVPDDLD YSEVPNPNLH
0301: SKDSHLSVPV LHDEPSADGL YNVAQHDLPQ EQSVPRSSSV TWDEKLEIVK PTSPVSYNDI LVDRVQDLEN VISVQDSEPL QVNFKTENVE HAKIEALNQE
0401: DILCHIGKTS VPVSGVSHFD EVSSETDNYV DAPNTLDSES ETEAGCHTKS EVQILSNFSS QGMEPRTEMR QVIAVQSSEP SDVEAHNSSH SSLSQDVTPR
0501: FLHLSSLNGS EHVQSPYATE FLQKQEQTVV DDFCERNAPN ISETKFHAYE CIDSVLSPIS GTFSSPTMML AETRCEGSIL KPDPLADVSG VPSIKLWTNG
0601: GLFGVEPSKP PELGSVNTQN APCMQNEPTS VDANSQGKVA GEPTNLDSSV QSNSTEDQFF ARGYNTVQKF KGSPSCHDNQ HVYNVKQDSN VSAEPFLQRK
0701: FEHNSEDTDV SNYASSDKLD MTRNSASSGA PLTDIYCTGS RQNGPSQSTV GISSSFSELA QRFLANTIHR EASLSTPSGN INTEIRKPKG ATSCLHDDIE
0801: VSNEVASQRT DEQSTNKKVA HVPAKEPVSF TSYYHEQSSP PLEYMKISSH PMNGLDNSKL KLDFSGGNLH ENSEDATFPS FQLHHGPVDN LPVVLSESDD
0901: DTFHRSCPYS SEELLSPRSY TSSEQWEQEG RSEYVDHELN DVPYRFQSST TSISRSMGFE QMNHSSISKP DGLEKFDAII DSSKVPSQSV SAMELPGLDS
1001: VLSVKNQQER KFPSLRENPA NVEVQSTNEL PPPPPLPPMQ WRTFKLSIKL DDNDPNISSN LNHLDELQPL RCPSQIKEQY LPGSPFVNEP ISPHSDKIQD
1101: QLKLNWEKRS TRSVSHKEVD RREDLLDQIR NKSFNLRRAK ISMPRDIPRP KTSITNANVA AILEKASAIR QAFVGSDKGG DDDNWTDA
0101: VHFAYVAGSD WHARIRDEQS IVLSTELPRF MMDSYEECRD PPRLFLLDKF DHAGTGACLK RYSDPPYFKR VWTASQMENS ENFQKEKKVH KTKRKGCLPH
0201: GQNQIQTRSR PRHGEVKHAV YISHHDSSGI RFASPSIDGQ RFSAVNVSSP DMRLNLEFLS RSTSFASKTR ENYAEQTSYV NPQGVPDDLD YSEVPNPNLH
0301: SKDSHLSVPV LHDEPSADGL YNVAQHDLPQ EQSVPRSSSV TWDEKLEIVK PTSPVSYNDI LVDRVQDLEN VISVQDSEPL QVNFKTENVE HAKIEALNQE
0401: DILCHIGKTS VPVSGVSHFD EVSSETDNYV DAPNTLDSES ETEAGCHTKS EVQILSNFSS QGMEPRTEMR QVIAVQSSEP SDVEAHNSSH SSLSQDVTPR
0501: FLHLSSLNGS EHVQSPYATE FLQKQEQTVV DDFCERNAPN ISETKFHAYE CIDSVLSPIS GTFSSPTMML AETRCEGSIL KPDPLADVSG VPSIKLWTNG
0601: GLFGVEPSKP PELGSVNTQN APCMQNEPTS VDANSQGKVA GEPTNLDSSV QSNSTEDQFF ARGYNTVQKF KGSPSCHDNQ HVYNVKQDSN VSAEPFLQRK
0701: FEHNSEDTDV SNYASSDKLD MTRNSASSGA PLTDIYCTGS RQNGPSQSTV GISSSFSELA QRFLANTIHR EASLSTPSGN INTEIRKPKG ATSCLHDDIE
0801: VSNEVASQRT DEQSTNKKVA HVPAKEPVSF TSYYHEQSSP PLEYMKISSH PMNGLDNSKL KLDFSGGNLH ENSEDATFPS FQLHHGPVDN LPVVLSESDD
0901: DTFHRSCPYS SEELLSPRSY TSSEQWEQEG RSEYVDHELN DVPYRFQSST TSISRSMGFE QMNHSSISKP DGLEKFDAII DSSKVPSQSV SAMELPGLDS
1001: VLSVKNQQER KFPSLRENPA NVEVQSTNEL PPPPPLPPMQ WRTFKLSIKL DDNDPNISSN LNHLDELQPL RCPSQIKEQY LPGSPFVNEP ISPHSDKIQD
1101: QLKLNWEKRS TRSVSHKEVD RREDLLDQIR NKSFNLRRAK ISMPRDIPRP KTSITNANVA AILEKASAIR QAFVGSDKGG DDDNWTDA
001: MPRNVYGMNQ SEVYRNVDRE DPKAILNGVA VTGLVGVLRQ LGDLAEFAAE IFHGIQEEVM ATASRSNQLK IRLQHIEATV PPLEKAMLAQ TTHIHFAYTG
101: GLEWHPRIPI TQNHLIYDDL PHIIMDPYEE CRGPPRLHLL DKFDINGPGS CLKRYSDPTY FRRASSNLSQ GNKKFQKDKK HCKMKKKKTS SRSRDMSRLA
201: SLANQNARKT FASFSFSGQT SSTKTTSTSD MEKRYDFQDH HSRSFESRSG SGYNECLSTA TSSLKTGERP KGVFVSSSLT PGSCTIASVL SECETEDAHD
301: NFQFSPSQGQ AARGSSCVSW DEKAEIVESL GLQTDEASEM VEANSVVDTL DEKPSYGEGI GGVDFHSKDN ENDKSESGLR KRAGIDEVRE IKNGREIVGE
401: PRDSEQETES EGECFVDALN TIESESENNQ GLQTSQVSSS CGVADERLEK SVCEQETEQN SYSVEDSCRS MDGLMANSFK NEENASSENV SVEMHQQNLQ
501: AGSDINRLQK NDLCANKDMR NDSGGKDTIT FTFVPGLENS LVDSSNPLIH HGLQENQETE AESSGDLEAF KIWTNGGLLG LKPSKPPVLA MPSSLSPDCK
601: TEERTVGFAE AEKDKADDLV ENASHRHVLN NSSLATPGTQ NPGSSNGIVM GIVDQRESHE TSSGVFGLSH KFLTSGFRRK DSFAHDRKTV PATIPENDEV
701: TTERRRFCDQ DINEKTFMDP FRDEAPIDWI TSSPPLQHMK ISLNPADTLQ ASRLKLKFSD GDNTYNTFSS FQLLPETGTS LPDSYSDDDT FCRSSPYMSD
801: TDYLSDNHSL SNSEPWEESS DSHGRKEQEL YDSFHESRHV DNNAEASPLG IKSESSCVAV NLSYLQNPAE PLPPPFPPMQ WMVSKTPSEK MEDKTQSLQL
901: QEALRFAFEK HISLPTAKNE LPSMVTSAPK PEIKAHLKNN VREEKQSANA KETETGDFLQ QIRTQVSANS SFL
101: GLEWHPRIPI TQNHLIYDDL PHIIMDPYEE CRGPPRLHLL DKFDINGPGS CLKRYSDPTY FRRASSNLSQ GNKKFQKDKK HCKMKKKKTS SRSRDMSRLA
201: SLANQNARKT FASFSFSGQT SSTKTTSTSD MEKRYDFQDH HSRSFESRSG SGYNECLSTA TSSLKTGERP KGVFVSSSLT PGSCTIASVL SECETEDAHD
301: NFQFSPSQGQ AARGSSCVSW DEKAEIVESL GLQTDEASEM VEANSVVDTL DEKPSYGEGI GGVDFHSKDN ENDKSESGLR KRAGIDEVRE IKNGREIVGE
401: PRDSEQETES EGECFVDALN TIESESENNQ GLQTSQVSSS CGVADERLEK SVCEQETEQN SYSVEDSCRS MDGLMANSFK NEENASSENV SVEMHQQNLQ
501: AGSDINRLQK NDLCANKDMR NDSGGKDTIT FTFVPGLENS LVDSSNPLIH HGLQENQETE AESSGDLEAF KIWTNGGLLG LKPSKPPVLA MPSSLSPDCK
601: TEERTVGFAE AEKDKADDLV ENASHRHVLN NSSLATPGTQ NPGSSNGIVM GIVDQRESHE TSSGVFGLSH KFLTSGFRRK DSFAHDRKTV PATIPENDEV
701: TTERRRFCDQ DINEKTFMDP FRDEAPIDWI TSSPPLQHMK ISLNPADTLQ ASRLKLKFSD GDNTYNTFSS FQLLPETGTS LPDSYSDDDT FCRSSPYMSD
801: TDYLSDNHSL SNSEPWEESS DSHGRKEQEL YDSFHESRHV DNNAEASPLG IKSESSCVAV NLSYLQNPAE PLPPPFPPMQ WMVSKTPSEK MEDKTQSLQL
901: QEALRFAFEK HISLPTAKNE LPSMVTSAPK PEIKAHLKNN VREEKQSANA KETETGDFLQ QIRTQVSANS SFL
Arabidopsis Description
SCAR3Protein SCAR3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LP46]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.