Factsheet for VIT_08s0058g00770.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0211g00050.t01
VIT_01s0011g05400.t01
VIT_01s0137g00280.t01
VIT_11s0016g00100.t01
VIT_15s0021g01130.t01
VIT_16s0098g01720.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29170.1	VIT_01s0137g00280.t01	AT1G13180.1	17267444
AT1G29170.1	VIT_01s0011g05400.t01	AT1G30825.1	17267444
AT1G29170.1	VIT_00s0211g00050.t01	AT2G22640.1	15534215
AT1G29170.1	VIT_00s0211g00050.t01	AT2G22640.1	17267444
AT1G29170.1	VIT_15s0021g01130.t01	AT2G44690.1	17267444
AT1G29170.1	VIT_16s0098g01720.t01	AT3G49290.1	17267444
AT1G29170.1	VIT_11s0016g00100.t01	AT4G16340.1	17267444
AT1G29170.1	VIT_16s0098g01720.t01	AT5G24310.1	17267444
AT4G18600.1	VIT_15s0021g01130.t01	AT2G44690.1	17267444
AT4G18600.1	VIT_16s0098g01720.t01	AT3G49290.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032131_P001	Maize	cytosol, extracellular, plastid	3.52	3.47
Zm00001d025836_P001	Maize	cytosol	2.82	3.2
Zm00001d025835_P001	Maize	cytosol	2.82	3.2
VIT_08s0058g00780.t01	Wine grape	cytosol	7.75	3.18
VIT_10s0003g01270.t01	Wine grape	cytosol	19.01	2.88
AT2G34150.2	Thale cress	nucleus	16.2	2.8
Bra005450.1-P	Field mustard	nucleus	16.9	2.7
Bra010847.1-P	Field mustard	nucleus	17.61	2.6
GSMUA_AchrUn_...	Banana	cytosol	19.01	2.36
AT1G29170.1	Thale cress	nucleus	16.9	2.35
GSMUA_Achr10P...	Banana	cytosol	18.31	2.19
TraesCS3A01G134300.3	Wheat	cytosol	18.31	2.03
TraesCS3D01G150600.1	Wheat	cytosol	18.31	2.03
TraesCS3B01G168100.1	Wheat	cytosol	18.31	2.02
GSMUA_Achr2P15470_001	Banana	nucleus	15.49	2.02
HORVU3Hr1G029210.3	Barley	cytosol	18.31	2.01
Os01t0208600-01	Rice	cytosol	18.31	1.95
KRH58965	Soybean	nucleus	13.38	1.92
KXG31590	Sorghum	cytosol	16.9	1.75
Zm00001d008906_P003	Maize	cytosol	16.9	1.72
CDX78875	Canola	extracellular, vacuole	6.34	1.1
AT4G18600.1	Thale cress	nucleus	14.08	0.99
Bra013329.1-P	Field mustard	nucleus	15.49	0.96

Protein Annotations

MapMan:35.1	ProteinID:CBI18083	ProteinID:CBI18083.3	UniProt:D7SR38	EMBL:FN594967	GO:GO:0003674
GO:GO:0003779	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005856	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0030036	InterPro:IPR003124
PFscan:PS51082	PANTHER:PTHR12902	PANTHER:PTHR12902:SF12	InterPro:SCAR/WAVE_fam	TIGR:TC64635	UniParc:UPI0001BE1454
ArrayExpress:VIT_08s0058g00770	EnsemblPlantsGene:VIT_08s0058g00770	EnsemblPlants:VIT_08s0058g00770.t01	InterPro:WH2_dom	RefSeq:XP_002265561	RefSeq:XP_002265561.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr8:-:9910865..9912299

Molecular Weight (calculated)

15702.4 Da

IEP (calculated)

4.875

GRAVY (calculated)

-0.813

Length

142 amino acids

Sequence
(BLAST)

001: MGDEQLEYPL QTSKEETEWL SYSDAIAPAS VDGKLNGNPS VKLPRPRDPL IEAVASHDKR TLRKVTERVR PQIGPKVDER DSLLEQIRAK SFNLKPAAVP
101: RPSIQGPRTN LKVAAMLEKA NAIRQALAGS DEDDDEDGWS DS

Best Arabidopsis Sequence Match ( AT2G38440.1 )
(BLAST)

0001: MPLTRYQSRN EYGLADPDLY QAADKDDPEA LLEGVAMAGL VGILRQLGDL AEFAAEMFHD LHEEVMATAS RSHGLMARVQ QLEAEFPSIE KALLCQTDHS
0101: PFFSNKGVEW HPNLQLEQSV VTSGDLPRCV MDSYEECRGP PRLFLLDKFD ISGAGACLKR YTDPSFVRLE TSSYEESWDD IQREKKSQKA KRRASQWRNG
0201: GTPENALSSH AKLHELFLEE HLEAHHSDPA RVVKLKTRKL DGCSLISKSG ESYMEKFVQT RVDSKISYEI ITQNPGLLTW NMDSARDVVT DIPEISMVGA
0301: MDKSHGGSRA EVSFPSEQEN VANVNMNGGF IEKDIETVPE STYNEVRGTT ITQDSQTVLN GKPGFFQQRS YSEDLTSEAD NYVDAPATME SETETDDECR
0401: PKSRSDTLKD GNHHIYSDAV EERMEDPPQF SFSHSNGNTP VSENGRSSFG KKSTSYSYSD TASISIDDQS DGEKLSGCLP STSSFKSELV DSMSHVTPEA
0501: NKVSHDLNVQ ESVSSSNVDG QTSLSSNGTC SSPRPVSQND QSCSLTVQSL ASEVVETSPE LVRLDLMKGG NDGRKVDPFD SSKSCASFDA KNSDLPSETS
0601: SISSTSEGSR CDSTIEKNCM VASNLVNSGT SPQAFVDSQT GKQLPIADTD FETNSIVACS EVLANSGSDP EERDGRCLTG KLVPCSAGVG MEVSPDTPSK
0701: VCGPSSADGI HLKDTLDDET DCVSVTNVVV DVDSKNSVAD VGSQSSVADI DSQSSVAEIS DEHSCAFGNT ADVSVSESHE DTLENGMSVP SDFNSGVEKL
0801: AGDASPTCSK CDDHISHEGF HDLSGLDNAT TDIVPNVELD VSDNDNDTSS GGVNHAVSLS STRGKGSLPW ISTNTYQSSS DAGEIFHDTV VESDGTLLED
0901: NNPESEIKMH KSPLEVSSEG LSTEPDNKDV ESIESTSPKP SLDQRNRDTE TKSPGESILD DNCIDSTQVY NLNLLESEAI DQAVREQTSY ASHEVADEEL
1001: LQSNVFRGLE FEPQSAGLEF APQSAGIELN RPKQELNLDP TFPSFGFIPE TIPPNPEDMP PLPPMQWLIG KVPHSFPTFM GESVETSSSA LSAAPPIGSS
1101: LNVQIGSPPS ELSVSLGSDE SERLPGGFVH NASEKPLQSS IQFPTMSTDL NSQYDSSELP TIPYQECIED FGSEENNLLA DHAAQNHELV YSQASSLQLP
1201: QVKHEDFKDD ADVHESQSSS DDHHCPETKS LTPTQSTKVE DKGHSVPDAS NAETAESSNT SVQKINPVSV GDAMWPVSCF SVAPTLDTYK TEVVPTVRLP
1301: RPRSPLVDAV AAHDRRKMKK VSEMVHPPIK SKQDDKDSLL AQIRNKSVNL KPAVTTRPSI QTGPRTDLRV AAILEKANTI RMAMAGSDED EDSDSWSDS

Arabidopsis Description

SCAR2Protein SCAR2 [Source:UniProtKB/Swiss-Prot;Acc:Q5XPJ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.