CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
peroxisome 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	mitochondrion, peroxisome, secretory
BaCelLo:	secretory
MultiLoc:	peroxisome
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG31590

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30825.1	KXG31590	AT1G29170.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007806_P003	Maize	mitochondrion, peroxisome	97.21	90.23
OQU88580	Sorghum	plasma membrane	64.4	90.04
TraesCS3A01G236900.1	Wheat	cytosol, mitochondrion	89.47	89.47
TraesCS3D01G237300.1	Wheat	cytosol	88.85	88.85
TraesCS3B01G262900.2	Wheat	cytosol	88.85	88.85
Os01t0654300-01	Rice	cytosol	17.34	87.5
HORVU3Hr1G059010.8	Barley	mitochondrion	90.4	83.43
GSMUA_Achr5P09480_001	Banana	mitochondrion	78.33	77.85
KRH07553	Soybean	cytosol	62.23	73.09
VIT_01s0011g05400.t01	Wine grape	mitochondrion	71.21	70.12
PGSC0003DMT400067754	Potato	mitochondrion	69.35	68.29
Solyc11g068610.1.1	Tomato	cytosol, mitochondrion	69.04	67.99
AT1G30825.1	Thale cress	mitochondrion	65.02	66.04
Bra014893.1-P	Field mustard	mitochondrion	64.4	65.41
CDX98226	Canola	cytosol, mitochondrion	64.09	65.09
Bra023140.1-P	Field mustard	mitochondrion	63.78	64.38
CDY02334	Canola	mitochondrion	63.78	64.17
CDY58050	Canola	mitochondrion	63.47	63.86
CDX77566	Canola	mitochondrion	56.35	62.54
KRH45310	Soybean	mitochondrion	37.77	54.46
EES12487	Sorghum	nucleus	32.51	26.92

Protein Annotations

MapMan:20.2.2.1.4	Gene3D:3.30.1460.20	UniProt:A0A1B6QLS4	InterPro:ARPC2	InterPro:ARPC2/4	ncoils:Coil
GO:GO:0003674	GO:GO:0003779	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005885	GO:GO:0008150	GO:GO:0009987
GO:GO:0015629	GO:GO:0016043	GO:GO:0030041	GO:GO:0030833	GO:GO:0034314	InterPro:IPR034666
EnsemblPlants:KXG38865	ProteinID:KXG38865	ProteinID:KXG38865.1	ProteinID:KXG38866.1	ProteinID:OQU92096.1	PFAM:PF04045
PANTHER:PTHR12058	EnsemblPlantsGene:SORBI_3001G289700	SUPFAM:SSF69645	UniParc:UPI00081AE4A2	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:-:56596135..56608070

Molecular Weight (calculated)

36159.3 Da

IEP (calculated)

9.050

GRAVY (calculated)

0.028

Length

323 amino acids

Sequence
(BLAST)

001: MILLQSPSRF LLQILQDRVL SGEKGIDIDC HTVEFDDVRY HIQFSMRNPK VMVLSVALPL PPPEAILYDG LPLGAIEAIK AAYGPVVQIL DPPKDGFDLT
101: MKINLTKLPL DEEQRNAILT QIASIREVVL GAPLKLLLKH LASKAVAPNV DKLVALVHRP NESFFLAPQA DKVTIVYPMR FQDSIDIVLA TSFLQEFVEA
201: RRTAALNNVP SCMWSPAPPL ELKGVSADAL NANAGFVTFV VYPRHVEGKK LDRTVWNLLT FHAYVSYHVK CSEGFMHTRM RRRVESLIQA LDQAKSDAEK
301: LKKLVHGGSF KRLSLKNEVD SRF

Best Arabidopsis Sequence Match ( AT1G30825.1 )
(BLAST)

001: MILLQSHSRF LLQTLLTRAQ NLDKAVELDY QWIEFDDVRY HVQVTMKNPN LLLLSVSLPN PPPEAMSFDG LPLGAIEAIK TTYGTGFQIL DPPRDGFSLT
101: LKLNFSKVRP DEELLTKLAS IREVVMGAPL KIIFKHLASR TVAPELDRLV AIMHRPNETF FLVPQADKVT VAFPMRFKDS VDTILATSFL KEFVEARRAA
201: ALNTAPSCSW SPTAPQELEG APKETLSANA GFVTFVIFPR HVEGKKLDRT VWNLSTFHAY VSYHVKFSEG FMHTRMRRRV ESMIQALDQA KPLEKTRSMN
301: NKSFKRLGLN EVNHTNSK

Arabidopsis Description

ARPC2AActin-related protein 2/3 complex subunit 2A [Source:UniProtKB/Swiss-Prot;Acc:Q8LGI3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.