Factsheet for TraesCS4A01G264400.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 16595579

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G050800.2	Wheat	cytosol	97.96	98.46
TraesCS4B01G050600.1	Wheat	cytosol	96.68	96.68
TraesCS5A01G000400.1	Wheat	golgi	90.31	93.9
Os03t0718100-01	Rice	plasma membrane	89.8	93.37
Zm00001d033790_P001	Maize	cytosol	89.54	93.1
Zm00001d013410_P001	Maize	cytosol	89.54	93.1
KXG37705	Sorghum	cytosol	89.54	93.1
TraesCS4A01G356100.2	Wheat	cytosol	87.5	90.5
HORVU4Hr1G008310.9	Barley	cytosol	90.82	87.47
TraesCS1A01G274400.1	Wheat	golgi	83.42	86.97
TraesCS3A01G377300.1	Wheat	cytosol	82.65	86.17
TraesCS5A01G124300.2	Wheat	golgi	87.5	83.86
TraesCS1A01G020500.2	Wheat	cytosol	86.99	83.78
TraesCS1A01G179000.1	Wheat	cytosol	89.8	78.22
TraesCS3A01G369400.1	Wheat	cytosol	40.05	39.25
TraesCS5A01G356000.1	Wheat	cytosol, nucleus	36.48	32.28
TraesCS5A01G420600.1	Wheat	cytosol, nucleus	29.08	31.49
TraesCS6A01G211000.1	Wheat	cytosol	34.18	31.38
TraesCS6A01G162300.2	Wheat	cytosol	35.46	31.38
TraesCS7A01G311700.1	Wheat	cytosol	34.69	31.19
TraesCS2A01G585700.1	Wheat	cytosol	28.06	25.58

Protein Annotations

EnsemblPlants:TraesCS4A01G264400.3	EnsemblPlantsGene:TraesCS4A01G264400	Gene3D:3.30.420.40	Gene3D:3.90.640.10	InterPro:Actin	InterPro:Actin/actin-like_CS
InterPro:Actin_CS	PANTHER:PTHR11937	PANTHER:PTHR11937:SF276	PFAM:PF00022	PRINTS:PR00190	ScanProsite:PS00406
ScanProsite:PS01132	SEG:seg	SMART:SM00268	SUPFAM:SSF53067	TIGR:cd00012	TMHMM:TMhelix
MapMan:20.2.1	:	:	:	:	:

Description

No Description!

Coordinates

chr4A:-:576702058..576703590

Molecular Weight (calculated)

43289.2 Da

IEP (calculated)

5.581

GRAVY (calculated)

-0.045

Length

392 amino acids

Sequence
(BLAST)

001: MADAEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN TPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDH LMKILTERGY
201: SFTTTAEREI VRDVKEKLSY IALDYDQEME TSKTSSSVEK SYELPDGQVI TIGSERFRCP EVLFQPSFIG MEAAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFTG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQVYKH CSIVLHSFHS WILVALLTVL LVVALADVDC KG

Best Arabidopsis Sequence Match ( AT3G12110.1 )
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN TPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDY LMKILTERGY
201: SFTTSAEREI VRDVKEKLAY IALDYEQEME TANTSSSVEK SYELPDGQVI TIGGERFRCP EVLFQPSLVG MEAAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF

Arabidopsis Description

ACT11Actin-11 [Source:UniProtKB/Swiss-Prot;Acc:P53496]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.