Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY52188 | Canola | nucleus | 45.62 | 48.61 |
| Bra039871.1-P | Field mustard | nucleus | 44.93 | 46.72 |
| CDY12454 | Canola | nucleus | 40.55 | 45.89 |
| CDY02344 | Canola | cytosol | 41.64 | 44.19 |
| Bra023148.1-P | Field mustard | nucleus | 42.33 | 43.83 |
| CDY09519 | Canola | nucleus | 41.23 | 41.98 |
| AT2G34920.2 | Thale cress | nucleus | 35.75 | 39.19 |
| GSMUA_Achr4P33210_001 | Banana | nucleus | 17.67 | 23.76 |
| VIT_01s0010g00340.t01 | Wine grape | nucleus | 22.88 | 22.91 |
| KRH37161 | Soybean | nucleus | 25.48 | 20.17 |
| KRH12155 | Soybean | nucleus | 23.97 | 19.08 |
| AT5G44690.1 | Thale cress | nucleus | 16.3 | 17.98 |
| GSMUA_Achr7P00390_001 | Banana | nucleus | 17.53 | 17.61 |
| Solyc10g005220.2.1 | Tomato | nucleus, plastid | 22.47 | 17.41 |
| Zm00001d006417_P002 | Maize | plastid | 13.7 | 17.04 |
| PGSC0003DMT400035458 | Potato | nucleus | 24.11 | 17.0 |
| Zm00001d021532_P001 | Maize | cytosol, plastid | 17.95 | 16.95 |
| HORVU2Hr1G048520.1 | Barley | plastid | 14.79 | 16.8 |
| TraesCS2B01G251300.1 | Wheat | nucleus, plastid | 16.58 | 16.48 |
| EER99396 | Sorghum | plastid | 17.4 | 16.45 |
| Solyc02g082100.2.1 | Tomato | vacuole | 24.25 | 16.42 |
| TraesCS2D01G233500.1 | Wheat | cytosol, plastid | 16.99 | 16.38 |
| PGSC0003DMT400029374 | Potato | nucleus, plastid | 22.05 | 16.33 |
| TraesCS2A01G229600.2 | Wheat | nucleus, plastid | 16.3 | 16.1 |
| AT4G20160.2 | Thale cress | cytosol | 26.03 | 15.66 |
| Os07t0499800-01 | Rice | nucleus | 16.03 | 15.56 |
| AT5G04460.1 | Thale cress | nucleus | 10.41 | 8.81 |
| AT2G27950.2 | Thale cress | nucleus | 7.67 | 6.67 |
| Os03t0107500-00 | Rice | plasma membrane | 2.05 | 4.11 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | EntrezGene:839970 | ProteinID:AEE31286.1 | EMBL:AK175826 | EMBL:AK175862 |
| EMBL:AK176110 | EMBL:AK176133 | ArrayExpress:AT1G30860 | EnsemblPlantsGene:AT1G30860 | RefSeq:AT1G30860 | TAIR:AT1G30860 |
| RefSeq:AT1G30860-TAIR-G | EnsemblPlants:AT1G30860.1 | TAIR:AT1G30860.1 | Unigene:At.40471 | EMBL:BT010579 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006464 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009966 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR001841 |
| InterPro:IPR013083 | RefSeq:NP_174371.2 | PFAM:PF13920 | PO:PO:0007616 | PO:PO:0009029 | PO:PO:0009047 |
| PO:PO:0025195 | PFscan:PS50089 | PANTHER:PTHR10044 | PANTHER:PTHR10044:SF103 | UniProt:Q6NQ80 | SMART:SM00184 |
| SUPFAM:SSF57850 | UniParc:UPI00001CE0D2 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
At1g30860 [Source:UniProtKB/TrEMBL;Acc:Q6NQ80]
Coordinates
chr1:-:10986496..10989593
Molecular Weight (calculated)
83027.0 Da
IEP (calculated)
5.162
GRAVY (calculated)
-0.969
Length
730 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSSPQRFGL ILRDRNQNAG VFQKNLKSPV KEVLKSHVSD ENLVDSWIET HNNKNNRVLE SPLESKRNDN LVASSLVQIW EARLNRSNGG NSPSSSQSTA
101: SSSSRSDSGV SVQDSGLSES SSIDGDSEIA DRTVEIESRS HGLVSDSGES KWGRVADLIR RLSNEDKKRT AGDNGSGGGG GLEIIRTPRP YCTSSSSEKS
201: NFPVVSFSPK IRGRQAFTDF LMQMERDRHR ELDSLFERNA VSRFTQRGRL QSMLRLRNLN RCLVIQDRNR SNAKTTGLNR IESGSAVLHL REKFHANVVN
301: SAAATDKRKN HQRSTEMNNK SVEETEGTTT TSTRLKDGGV TLEAFFAERL RPRNRKIEEA TLCKEEESVS GTVDSQKNCL QLQETREVEE TCNDGKSEKK
401: EEENTSPSEY LSRESRLRQN QDENNVGKYM QETRETEGLV HESNEMDQCL DQQETSYLNR WGEQEEYADE QSYYGEYNDD WLSEIARPRS YWEELRKSRY
501: LEVMNTRSEK DDICRLLERR TVTDFLDSGL REKIDNLMMS RVQTHSDKHS KKWELQQEEE EEVNFEIDEE IKEEPLRGGE EQDDRDDLSQ SSSSHISASS
601: PAGSWSSQDT DVTSTPALVV QNPQSPEMEL ISGMRSQIQQ LQQEMSVLRD SVKTCLDANA SLQHKAHQEN PMKRKCCVCD ETQVEAVLYR CGHMCMCLKC
701: ANELHWSGGK CPICRAQIVD VVRVIYDTRN
101: SSSSRSDSGV SVQDSGLSES SSIDGDSEIA DRTVEIESRS HGLVSDSGES KWGRVADLIR RLSNEDKKRT AGDNGSGGGG GLEIIRTPRP YCTSSSSEKS
201: NFPVVSFSPK IRGRQAFTDF LMQMERDRHR ELDSLFERNA VSRFTQRGRL QSMLRLRNLN RCLVIQDRNR SNAKTTGLNR IESGSAVLHL REKFHANVVN
301: SAAATDKRKN HQRSTEMNNK SVEETEGTTT TSTRLKDGGV TLEAFFAERL RPRNRKIEEA TLCKEEESVS GTVDSQKNCL QLQETREVEE TCNDGKSEKK
401: EEENTSPSEY LSRESRLRQN QDENNVGKYM QETRETEGLV HESNEMDQCL DQQETSYLNR WGEQEEYADE QSYYGEYNDD WLSEIARPRS YWEELRKSRY
501: LEVMNTRSEK DDICRLLERR TVTDFLDSGL REKIDNLMMS RVQTHSDKHS KKWELQQEEE EEVNFEIDEE IKEEPLRGGE EQDDRDDLSQ SSSSHISASS
601: PAGSWSSQDT DVTSTPALVV QNPQSPEMEL ISGMRSQIQQ LQQEMSVLRD SVKTCLDANA SLQHKAHQEN PMKRKCCVCD ETQVEAVLYR CGHMCMCLKC
701: ANELHWSGGK CPICRAQIVD VVRVIYDTRN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.