Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31650 | Canola | nucleus, plastid | 43.69 | 45.19 |
| Bra005381.1-P | Field mustard | nucleus | 42.49 | 43.67 |
| Bra021939.1-P | Field mustard | nucleus, plastid | 38.89 | 41.57 |
| CDX84276 | Canola | endoplasmic reticulum, extracellular | 40.24 | 39.59 |
| AT1G30860.1 | Thale cress | cytosol | 39.19 | 35.75 |
| VIT_01s0010g00340.t01 | Wine grape | nucleus | 25.83 | 23.59 |
| GSMUA_Achr4P33210_001 | Banana | nucleus | 18.92 | 23.2 |
| KRH37161 | Soybean | nucleus | 27.78 | 20.07 |
| KRH12155 | Soybean | nucleus | 27.33 | 19.85 |
| AT5G44690.1 | Thale cress | nucleus | 19.22 | 19.34 |
| GSMUA_Achr7P00390_001 | Banana | nucleus | 20.72 | 18.98 |
| Solyc10g005220.2.1 | Tomato | nucleus, plastid | 26.13 | 18.47 |
| HORVU2Hr1G048520.1 | Barley | plastid | 17.27 | 17.88 |
| PGSC0003DMT400029374 | Potato | nucleus, plastid | 25.53 | 17.24 |
| PGSC0003DMT400035458 | Potato | nucleus | 26.73 | 17.2 |
| TraesCS2A01G229600.2 | Wheat | nucleus, plastid | 19.07 | 17.19 |
| Solyc02g082100.2.1 | Tomato | vacuole | 27.78 | 17.16 |
| AT4G20160.2 | Thale cress | cytosol | 30.93 | 16.98 |
| TraesCS2B01G251300.1 | Wheat | nucleus, plastid | 18.47 | 16.76 |
| TraesCS2D01G233500.1 | Wheat | cytosol, plastid | 18.62 | 16.38 |
| Zm00001d006417_P002 | Maize | plastid | 14.11 | 16.01 |
| EER99396 | Sorghum | plastid | 18.47 | 15.93 |
| Zm00001d021532_P001 | Maize | cytosol, plastid | 18.47 | 15.91 |
| Os07t0499800-01 | Rice | nucleus | 17.72 | 15.69 |
| AT5G04460.1 | Thale cress | nucleus | 10.66 | 8.23 |
| AT2G27950.2 | Thale cress | nucleus | 8.11 | 6.44 |
| Os03t0107500-00 | Rice | plasma membrane | 2.25 | 4.11 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | EntrezGene:818057 | UniProt:A0A1P8B041 | ProteinID:ANM62278.1 | ArrayExpress:AT2G34920 |
| EnsemblPlantsGene:AT2G34920 | RefSeq:AT2G34920 | TAIR:AT2G34920 | RefSeq:AT2G34920-TAIR-G | EnsemblPlants:AT2G34920.2 | Unigene:At.66369 |
| ncoils:Coil | Symbol:EDA18 | InterPro:IPR001841 | InterPro:IPR013083 | RefSeq:NP_001324447.1 | PFAM:PF13920 |
| PFscan:PS50089 | PANTHER:PTHR10044 | PANTHER:PTHR10044:SF103 | SUPFAM:SSF57850 | UniParc:UPI0008484C86 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
EDA18RING/U-box superfamily protein [Source:TAIR;Acc:AT2G34920]
Coordinates
chr2:-:14728375..14731255
Molecular Weight (calculated)
75358.5 Da
IEP (calculated)
6.829
GRAVY (calculated)
-0.814
Length
666 amino acids
Sequence
(BLAST)
(BLAST)
001: MASLRPSFGS VLRDRNQRHN DDVVFKKNLK AQVKTAPPAI SDESSENRVD SLIGNKRKKN NKSRPGSPEK PRTRKGNNFS DNLGGASSLV QIWEARLNRS
101: NGGNSAIHSQ SIEISSEASV QEIHLLAPSI DGESESENES KSPDQTVEIE SGTLNSVSDI IRRLSNEQKL TASNNGGAVD MPIVKTPTLE KSSFQVVTCS
201: PRIRGRQAYS DLLVHLERER HRELESLLGR NAVSRFPQRG RLQSMLRLRS LKRGLAIQDR HRGTTKSDLN RFQPSSTILH LREKLREKAA NAAAEAGLKK
301: GQQSTVETES MQSKETSGIL HSPSTERLSP QKRNIEEAIL RKNETETKMS YLQLKKAIVA EVLERESDNT SPLTSVTPQE PRILRNEEAG KLESGTEGTQ
401: ETPFLETQEM SFQSGWEEQE EYEDEQSYYG DMSYDWFTEI SRPRTYWEDL RKSRYLEVMN TKSDKDDICR LLERRTVSGF LQSGLREKID KLIMSRVQIH
501: PAHRIEEATK EEEKYDIGEE KDEDRDDLSQ SSSQIFAPSP AGSWSSLDTG VTSTPTHNLH STEMEIISEM RSHILQLQLE MSELRDSVKT CLDVNASLQK
601: SVHLENPFKR KCCVCNETQV ETLLYRCGHM CTCLRCANEL QYNGGKCPIC HAKILDVVRV FVDSRT
101: NGGNSAIHSQ SIEISSEASV QEIHLLAPSI DGESESENES KSPDQTVEIE SGTLNSVSDI IRRLSNEQKL TASNNGGAVD MPIVKTPTLE KSSFQVVTCS
201: PRIRGRQAYS DLLVHLERER HRELESLLGR NAVSRFPQRG RLQSMLRLRS LKRGLAIQDR HRGTTKSDLN RFQPSSTILH LREKLREKAA NAAAEAGLKK
301: GQQSTVETES MQSKETSGIL HSPSTERLSP QKRNIEEAIL RKNETETKMS YLQLKKAIVA EVLERESDNT SPLTSVTPQE PRILRNEEAG KLESGTEGTQ
401: ETPFLETQEM SFQSGWEEQE EYEDEQSYYG DMSYDWFTEI SRPRTYWEDL RKSRYLEVMN TKSDKDDICR LLERRTVSGF LQSGLREKID KLIMSRVQIH
501: PAHRIEEATK EEEKYDIGEE KDEDRDDLSQ SSSQIFAPSP AGSWSSLDTG VTSTPTHNLH STEMEIISEM RSHILQLQLE MSELRDSVKT CLDVNASLQK
601: SVHLENPFKR KCCVCNETQV ETLLYRCGHM CTCLRCANEL QYNGGKCPIC HAKILDVVRV FVDSRT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.