Factsheet for Os01t0926800-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 12746528

msms PMID: 12746528 doi

JL Heazlewood, KA Howell, J Whelan, AH Millar

Plant Molecular Biology Group, School of Biomedical and Chemical Sciences, The University of Western Australia, Crawley 6009, Australia.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0186400-01
Os02t0736100-01
Os06t0102700-01
Os06t0251700-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01630.1	Os02t0736100-01	AT1G68060.1	21798944
AT1G01630.1	Os06t0251700-01	AT1G68060.1	21798944
AT1G01630.1	Os06t0102700-01	AT3G54850.1	21798944
AT1G01630.1	Os02t0186400-01	AT4G32190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES02004	Sorghum	cytosol	75.71	76.02
TraesCS3B01G475100.1	Wheat	cytosol	71.66	74.06
Zm00001d042274_P001	Maize	cytosol	73.68	72.51
TraesCS3D01G433800.1	Wheat	cytosol	70.04	72.08
TraesCS3A01G441100.2	Wheat	cytosol	69.64	71.67
Zm00001d042275_P001	Maize	cytosol	71.66	70.52
TraesCS3B01G475000.1	Wheat	cytosol	70.04	70.33
TraesCS3A01G440900.1	Wheat	cytosol	70.04	70.33
TraesCS3D01G433700.1	Wheat	cytosol	70.85	70.28
EES02002	Sorghum	cytosol	72.06	69.8
TraesCS3A01G441000.1	Wheat	cytosol	68.83	69.67
HORVU3Hr1G096280.6	Barley	plastid	72.87	58.44
Os03t0850700-01	Rice	cytosol	57.09	54.02
GSMUA_Achr4P15920_001	Banana	cytosol	56.28	52.85
Bra032645.1-P	Field mustard	cytosol	46.56	49.78
KRH41051	Soybean	cytosol	49.8	49.6
HORVU3Hr1G096290.4	Barley	plastid	69.64	48.86
AT1G01630.1	Thale cress	cytosol	49.39	47.84
Bra033247.1-P	Field mustard	cytosol	47.77	46.27
CDX90047	Canola	cytosol	47.77	46.27
CDY15164	Canola	cytosol	46.96	45.49
VIT_17s0000g00130.t01	Wine grape	cytosol	46.96	45.31
VIT_01s0150g00170.t01	Wine grape	cytosol	44.94	45.12
KRH63881	Soybean	cytosol	48.18	45.08
KRH54081	Soybean	cytosol	48.18	44.91
CDY38020	Canola	cytosol	46.96	44.27
PGSC0003DMT400036745	Potato	cytosol	45.34	41.33
Solyc03g118150.2.1	Tomato	cytosol	44.53	40.59
KRH59732	Soybean	endoplasmic reticulum, golgi	44.13	38.11
Solyc06g068800.2.1	Tomato	cytosol	44.13	35.28
PGSC0003DMT400065724	Potato	cytosol	44.13	35.28
Zm00001d009968_P001	Maize	cytosol	40.08	31.73
Zm00001d034765_P001	Maize	cytosol	36.03	31.23
Os03t0724100-01	Rice	cytosol	29.15	24.08
Os02t0321500-01	Rice	mitochondrion	22.27	21.07
Os01t0264700-01	Rice	cytosol	24.7	19.61
Os05t0267800-01	Rice	cytosol	21.05	18.37
Os02t0752000-01	Rice	cytosol	23.89	15.61
Os03t0219100-01	Rice	cytosol	23.89	13.47

Protein Annotations

Gene3D:3.40.525.10	MapMan:35.2	EntrezGene:4326950	ProteinID:BAB89672.1	ProteinID:BAB92895.1	ProteinID:BAF07179.1
ProteinID:BAS75998.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf	InterPro:IPR001251
InterPro:IPR036865	EnsemblPlantsGene:Os01g0926800	EnsemblPlants:Os01t0926800-01	PFAM:PF00650	PFscan:PS50191	PANTHER:PTHR10174
PANTHER:PTHR10174:SF158	UniProt:Q8S1X5	SMART:SM00516	SMART:SM01100	SUPFAM:SSF46938	SUPFAM:SSF52087
UniParc:UPI00000A4E0C	RefSeq:XP_015636207.1	:	:	:	:

Description

Cellular retinaldehyde-binding/triple function, N-terminal domain containing protein. (Os01t0926800-01)

Coordinates

chr1:+:40644654..40648302

Molecular Weight (calculated)

28079.9 Da

IEP (calculated)

8.299

GRAVY (calculated)

-0.366

Length

247 amino acids

Sequence
(BLAST)

001: MAGNRGGDAG EGEWLKVAEL RATVEAQDPH AKEVDNLTLR RFLRARDHNV EKASAMLLKA LRWRREAVPG GSVPEEKVQS DLDDDKVYMG GADRTGRPIL
101: LAFPAKHFSA KRDMPKFKSY CVYLLDSICA RIPRGQEKFV CIVDLKGWGY SNCDIRAYIA AIEIMQNYYP ERLGKALMIH VPYMFMKAWK MIYPFIDNVT
201: RDKFVFVDDK SLQEVLHQEI DDSQIPDTLG GKLAPVSLKN NARINLD

Best Arabidopsis Sequence Match ( AT1G01630.1 )
(BLAST)

001: MENKETKQEP AAAAEQKTVP LIEDEIERSK VGIMRALCDR QDPETKEVDD LMIRRFLRAR DLDIEKASTM FLNYLTWKRS MLPKGHIPEA EIANDLSHNK
101: MCMQGHDKMG RPIAVAIGNR HNPSKGNPDE FKRFVVYTLE KICARMPRGQ EKFVAIGDLQ GWGYSNCDIR GYLAALSTLQ DCYPERLGKL YIVHAPYIFM
201: TAWKVIYPFI DANTKKKIVF VENKKLTPTL LEDIDESQLP DIYGGKLPLV PIQET

Arabidopsis Description

Polyphosphoinositide binding protein, putative [Source:UniProtKB/TrEMBL;Acc:Q9LQ96]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.