Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70223 | Canola | cytosol | 93.95 | 94.19 |
| Bra009452.1-P | Field mustard | nucleus | 91.89 | 85.3 |
| AT5G04460.1 | Thale cress | nucleus | 75.16 | 67.67 |
| CDY08599 | Canola | nucleus | 53.67 | 57.68 |
| CDY41355 | Canola | nucleus | 54.18 | 55.91 |
| KRG92104 | Soybean | nucleus | 58.17 | 53.3 |
| VIT_13s0019g05390.t01 | Wine grape | nucleus | 58.94 | 53.07 |
| CDY00948 | Canola | cytosol | 48.78 | 52.57 |
| Solyc11g007910.1.1 | Tomato | nucleus | 56.63 | 52.51 |
| KRH34682 | Soybean | nucleus | 57.01 | 52.18 |
| PGSC0003DMT400070376 | Potato | nucleus | 56.89 | 51.16 |
| PGSC0003DMT400043571 | Potato | nucleus | 54.83 | 49.59 |
| Solyc03g071670.1.1 | Tomato | nucleus | 26.25 | 45.64 |
| CDY04520 | Canola | cytosol, plastid | 32.95 | 37.76 |
| CDX71406 | Canola | cytosol | 20.85 | 28.98 |
| CDY31650 | Canola | nucleus, plastid | 8.49 | 10.25 |
| CDY12454 | Canola | nucleus | 8.24 | 9.92 |
| CDY52188 | Canola | nucleus | 8.49 | 9.64 |
| CDX84276 | Canola | endoplasmic reticulum, extracellular | 7.72 | 8.86 |
| CDY09519 | Canola | nucleus | 7.98 | 8.65 |
| CDY02344 | Canola | cytosol | 7.59 | 8.58 |
| CDY14941 | Canola | nucleus | 6.44 | 8.05 |
| CDX96975 | Canola | cytosol | 6.05 | 6.84 |
| CDY50063 | Canola | cytosol | 8.88 | 6.28 |
| CDX78978 | Canola | cytosol | 8.37 | 5.74 |
Protein Annotations
| EnsemblPlants:CDY44857 | EnsemblPlantsGene:GSBRNA2T00080909001 | Gene3D:3.30.40.10 | GO:A0A078I468 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR10044 | PANTHER:PTHR10044:SF106 | PFAM:PF13920 |
| PFscan:PS50089 | ProteinID:CDY44857 | ProteinID:CDY44857.1 | SEG:seg | SUPFAM:SSF57850 | UniParc:UPI0004EDB359 |
| UniProt:A0A078I468 | MapMan:35.2 | : | : | : | : |
Description
BnaC09g50570DBnaC09g50570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I468]
Coordinates
chrLK032604:+:75408..79058
Molecular Weight (calculated)
89492.0 Da
IEP (calculated)
5.810
GRAVY (calculated)
-1.127
Length
777 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSIQPLQQK SDSRDDARAE FERGFEEFMR GHLDDCISFH NQEDEDDDDV NDQLVRRRRL EGESSRRRQS QILSRWAARQ AQEMITTIER RNRESELIAL
101: AGLQTVSMLD SSFLRESQST TTRRQERPRP RPRTQTASSG ILQMWRELED EHHVDNNNNN ASSREQSPDL GDGERERERV RHIVRGWMDS GINDHSSSVT
201: QRDNNNRRGE WLGDTERERV RVIREWMQVT SQQRGGGGRT STTPREDQGS LLVPEADRVR VGLGRQALLD LLTRAERERQ RELQGLLEHR AVSDFAHRNR
301: IQSLLRGRFL RNERPADQER TPSTASRELL QLRERQTVSG LREGFHNGRE SIVRENSSDT DSNSTIALAT DATAENSQHI TDDSSATSSR QGNNSPLPHD
401: DSVRSESNLA NEDRDWEEDT NQRRVWQEDV TADERLNLQQ TTLTQSSDWG NGNADINHDE TSVSDIHREA SGITDDEGHT QESHGVWHED VPRQSNGNWT
501: ETRSEAPRTR RVVPLRRLSR FHPPEDDNVY SMELRELLGR RSVSNLLHSG FRESLDQLIQ SYAERRVHTH DDWDLHDNLQ TAIPDSPERD RDHQVFVQND
601: NQLNDINGPQ MLPTPPVPPP QPIWHHSSWS RHSMHRSEME WEVMNDLRGD VARLQQGMSQ MQRMLEACMD MQLELQRSVR QEVSAALNRS AGDQAGMSAE
701: TSEDGSRWIH ARKGTCCVCC DNHIDALLYR CGHMCTCSQC ANELVRNGGK CPLCRAPIME GRRRYIEGMK QHKGKSE
101: AGLQTVSMLD SSFLRESQST TTRRQERPRP RPRTQTASSG ILQMWRELED EHHVDNNNNN ASSREQSPDL GDGERERERV RHIVRGWMDS GINDHSSSVT
201: QRDNNNRRGE WLGDTERERV RVIREWMQVT SQQRGGGGRT STTPREDQGS LLVPEADRVR VGLGRQALLD LLTRAERERQ RELQGLLEHR AVSDFAHRNR
301: IQSLLRGRFL RNERPADQER TPSTASRELL QLRERQTVSG LREGFHNGRE SIVRENSSDT DSNSTIALAT DATAENSQHI TDDSSATSSR QGNNSPLPHD
401: DSVRSESNLA NEDRDWEEDT NQRRVWQEDV TADERLNLQQ TTLTQSSDWG NGNADINHDE TSVSDIHREA SGITDDEGHT QESHGVWHED VPRQSNGNWT
501: ETRSEAPRTR RVVPLRRLSR FHPPEDDNVY SMELRELLGR RSVSNLLHSG FRESLDQLIQ SYAERRVHTH DDWDLHDNLQ TAIPDSPERD RDHQVFVQND
601: NQLNDINGPQ MLPTPPVPPP QPIWHHSSWS RHSMHRSEME WEVMNDLRGD VARLQQGMSQ MQRMLEACMD MQLELQRSVR QEVSAALNRS AGDQAGMSAE
701: TSEDGSRWIH ARKGTCCVCC DNHIDALLYR CGHMCTCSQC ANELVRNGGK CPLCRAPIME GRRRYIEGMK QHKGKSE
001: MTSIQPLLQK SESRDDVRAE FERGLEEFMR GHLDECISFG SCSSVHNPED EDNEDDQLVR RRRRSELEGD NLAESSAARR RQSQILSRWA ARQAQEMITT
101: IERRNRESEL IALAGLQTVS MLDSSFLRES QSQSPSSRRQ GAASERPNTQ ASGILQMWRE LEDEHVLNRA RERVRERLRQ QRSVESNTNL SSSIASESQL
201: SENNGSLRDS SESENDFGSW SHDRNEHGDN NNTSSREQSP DLGDGERERV RHIARGWMDS RINDHSSNVR QRDDNRRPEW LGDTERERVR IIREWMQMTS
301: QQRGGARATP REDQRSTSEA DRNHDAAPQV DRVRVGLAVN HEEGQPPHVR RDLRRVRGRQ ALLDLLMRAE RERQRELQGL LEHRAVSDFA HRNRIQSLLR
401: GRFLRNERPT VPERTPSMAS RELLQLRERQ TVSGLREGFH NGRENIVHEN TSNTDNDNSN TSTNALAIAI TAGNSQRVTD ESSTSSRQGN DSPILPDNSE
501: SNLANADRDW EEDTNQRRIW QENVPVDERP NLEQTTLTQF DGYDNTDINR DETSVSDMHR EASGFADDEY RTQEAHGVWH ENSSRQSDGN WPGTRSEALR
601: SRRVVQLRRL NRFHPPEDDN VYSMELRELL SRRSVSNLLH SGFRESLDQL IQSYAERRGH THVDWDLHAN LQTAIPDSPE RDTDHQVFVR NDNQLNGING
701: SQLLPTPPAP PPQPIWHQDL HHTSWSRHSM HRSEIEWEVM NDLRGDVARL QQGMSQMQRM LEACMDMQLE LQRSVRQEVS AALNRSAGDQ GMSAETSEDG
801: SRWSHVSKGT CCVCCDNHID ALLYRCGHMC TCSKCANELV RNGGKCPLCR APIIEVIRAY SIL
101: IERRNRESEL IALAGLQTVS MLDSSFLRES QSQSPSSRRQ GAASERPNTQ ASGILQMWRE LEDEHVLNRA RERVRERLRQ QRSVESNTNL SSSIASESQL
201: SENNGSLRDS SESENDFGSW SHDRNEHGDN NNTSSREQSP DLGDGERERV RHIARGWMDS RINDHSSNVR QRDDNRRPEW LGDTERERVR IIREWMQMTS
301: QQRGGARATP REDQRSTSEA DRNHDAAPQV DRVRVGLAVN HEEGQPPHVR RDLRRVRGRQ ALLDLLMRAE RERQRELQGL LEHRAVSDFA HRNRIQSLLR
401: GRFLRNERPT VPERTPSMAS RELLQLRERQ TVSGLREGFH NGRENIVHEN TSNTDNDNSN TSTNALAIAI TAGNSQRVTD ESSTSSRQGN DSPILPDNSE
501: SNLANADRDW EEDTNQRRIW QENVPVDERP NLEQTTLTQF DGYDNTDINR DETSVSDMHR EASGFADDEY RTQEAHGVWH ENSSRQSDGN WPGTRSEALR
601: SRRVVQLRRL NRFHPPEDDN VYSMELRELL SRRSVSNLLH SGFRESLDQL IQSYAERRGH THVDWDLHAN LQTAIPDSPE RDTDHQVFVR NDNQLNGING
701: SQLLPTPPAP PPQPIWHQDL HHTSWSRHSM HRSEIEWEVM NDLRGDVARL QQGMSQMQRM LEACMDMQLE LQRSVRQEVS AALNRSAGDQ GMSAETSEDG
801: SRWSHVSKGT CCVCCDNHID ALLYRCGHMC TCSKCANELV RNGGKCPLCR APIIEVIRAY SIL
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JWA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.