Factsheet for Bra009452.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70223	Canola	cytosol	89.01	96.13
CDY44857	Canola	nucleus	85.3	91.89
AT5G04460.1	Thale cress	nucleus	74.31	72.07
KRG92104	Soybean	nucleus	57.95	57.19
Bra034121.1-P	Field mustard	nucleus	54.12	56.62
VIT_13s0019g05390.t01	Wine grape	nucleus	58.18	56.43
Solyc11g007910.1.1	Tomato	nucleus	56.27	56.21
KRH34682	Soybean	nucleus	56.99	56.18
Bra029846.1-P	Field mustard	nucleus	51.02	55.24
PGSC0003DMT400070376	Potato	nucleus	56.39	54.63
PGSC0003DMT400043571	Potato	nucleus	54.36	52.97
Solyc03g071670.1.1	Tomato	nucleus	27.0	50.56
GSMUA_AchrUn_...	Banana	nucleus	44.21	47.99
GSMUA_Achr11P...	Banana	nucleus	39.55	46.82
GSMUA_Achr8P11220_001	Banana	nucleus	41.58	46.22
GSMUA_Achr1P17370_001	Banana	nucleus	37.99	45.69
GSMUA_Achr1P00380_001	Banana	nucleus	35.24	44.29
Zm00001d019766_P001	Maize	nucleus	10.16	42.5
Os09t0570500-01	Rice	nucleus	22.7	42.13
Os02t0823300-01	Rice	nucleus	36.8	40.85
EES06049	Sorghum	nucleus	36.8	40.37
GSMUA_Achr5P12430_001	Banana	nucleus	35.24	40.25
KXG35138	Sorghum	nucleus	33.45	40.0
Zm00001d019765_P001	Maize	nucleus	17.8	39.84
TraesCS6A01G405400.1	Wheat	nucleus	35.72	39.03
TraesCS6D01G389100.1	Wheat	nucleus	35.6	38.9
TraesCS6B01G449800.2	Wheat	nucleus	35.01	38.15
HORVU4Hr1G000090.6	Barley	cytosol, mitochondrion, nucleus	24.85	37.96
OQU93435	Sorghum	nucleus	29.27	37.52
TraesCS4D01G003000.2	Wheat	nucleus	31.78	37.36
HORVU4Hr1G086680.2	Barley	mitochondrion	18.52	35.63
Zm00001d051871_P002	Maize	nucleus	35.72	35.6
GSMUA_Achr2P03990_001	Banana	nucleus	29.75	35.42
TraesCS4A01G311200.1	Wheat	nucleus	29.87	34.97
TraesCS4B01G003100.1	Wheat	nucleus	29.63	34.88
HORVU6Hr1G092920.1	Barley	cytosol	26.52	34.58
Zm00001d027308_P001	Maize	nucleus	27.6	34.53
Bra011990.1-P	Field mustard	nucleus, plastid	30.7	33.64
TraesCS5A01G529500.1	Wheat	plastid	28.79	33.57
TraesCS4D01G354300.1	Wheat	plastid	28.32	33.43
Bra021939.1-P	Field mustard	nucleus, plastid	8.24	11.08
Bra005381.1-P	Field mustard	nucleus	7.65	9.88
Bra039871.1-P	Field mustard	nucleus	7.77	9.26
Bra023148.1-P	Field mustard	nucleus	7.77	9.22
Bra013447.1-P	Field mustard	nucleus	8.36	5.66

Protein Annotations

EnsemblPlants:Bra009452.1	EnsemblPlants:Bra009452.1-P	EnsemblPlantsGene:Bra009452	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR10044	PANTHER:PTHR10044:SF106	PFAM:PF13920
PFscan:PS50089	SEG:seg	SUPFAM:SSF57850	UniParc:UPI0002547960	UniProt:M4CZ05	MapMan:35.2

Description

AT5G04460 (E=3e-277) | protein binding / zinc ion binding

Coordinates

chrA10:-:16705477..16708746

Molecular Weight (calculated)

96494.5 Da

IEP (calculated)

5.331

GRAVY (calculated)

-1.159

Length

837 amino acids

Sequence
(BLAST)

001: MTSIQPLQQK SDSRDDARAE FERGFEEFMR GHLDDCISFH NQEDEDDDDD EEDQLVRRRG ESSRRRQSQI LSRWAARQAQ EMITTIERRN RESELIALAG
101: LQTVSMLDSS FLRESQSTTT RRQERPRPRP RTQTASSGIL QMWRELEDEH VRARERLRHQ RSVESSNTNL SSSVASENNE SESEYGSWSR DRNEHVDNNN
201: NNNNASSREQ SPDLGDGERE RERERVRHIV RGWMDSGIND HSSSVTQRDN NNNRRGEWLG DTERERVRVI REWMQVTSQQ RGGGGGRTST TPREDQGSLL
301: APEADRVRVG LGANNEEGGQ PQQVRRDLRR LRGRQALLDL LTRAERERQR ELQGLLEHRA VSDFAHRNRI QSLLRGRFLR NERPADQERT PSTASRELLQ
401: LRERQTVSGL REGFHNERES IVRENSSDTD NNSTAALAID ATAENSQHIT DDSSATSSRQ GNNSPLLHDD SVRSESNITN EDRDWEEDTN QRRVWQEDVT
501: VDERLNLQQT TLTQSSDWGN GNADINNDET SVSDLHREAS GITDDEDHTQ EGHGVWHEDV PRQSNGNWNE TRPEAPRTRR VVPLRRLSRF HPPEDDNVYS
601: MELRELLGRR SVSNLLHSGF RESLDQLIQS YAERRVHTHD DWDLHDNLQT AIPDSPERDR DHQVFVQNDN QLNDINGPQM LPTPPVPPPQ PIWHHSSWSR
701: HSMHRSEMEW EVMNDLRGDV ARLQQGMSQM QRMLEACMDM QLELQRSVRQ EVSAALNRSA GDQAGMSAET SEDGSRWIHV RKGTCCVCCD NHIDALLYRC
801: GHMCTCSQCA NELVRNGGKC PLCRAPIMEV IRAYSIL

Best Arabidopsis Sequence Match ( AT5G04460.6 )
(BLAST)

001: MTSIQPLLQK SESRDDVRAE FERGLEEFMR GHLDECISFG SCSSVHNPED EDNEDDQLVR RRRRSELEGD NLAESSAARR RQSQILSRWA ARQAQEMITT
101: IERRNRESEL IALAGLQTVS MLDSSFLRES QSQSPSSRRQ GAASERPNTQ ASGILQMWRE LEDEHVLNRA RERVRERLRQ QRSVESNTNL SSSIASESQL
201: SENNGSLRDS SESENDFGSW SHDRNEHGDN NNTSSREQSP DLGDGERERV RHIARGWMDS RINDHSSNVR QRDDNRRPEW LGDTERERVR IIREWMQMTS
301: QQRGGARATP REDQRSTSEA DRNHDAAPQV DRVRVGLAVN HEEGQPPHVR RDLRRVRGRQ ALLDLLMRAE RERQRELQGL LEHRAVSDFA HRNRIQSLLR
401: GRFLRNERPT VPERTPSMAS RELLQLRERQ TVSGLREGFH NGRENIVHEN TSNTDNDNSN TSTNALAIAI TAGNSQRVTD ESSTSSRQGN DSPILPDNSE
501: SNLANADRDW EEDTNQRRIW QENVPVDERP NLEQTTLTQF DGYDNTDINR DETSVSDMHR EASGFADDEY RTQEAHGVWH ENSSRQSDGN WPGTRSEALR
601: SRRVVQLRRL NRFHPPEDDN VYSMELRELL SRRSVSNLLH SGFRESLDQL IQSYAERRGH THVDWDLHAN LQTAIPDSPE RDTDHQVFVR NDNQLNGING
701: SQLLPTPPAP PPQPIWHQDL HHTSWSRHSM HRSEIEWEVM NDLRGDVARL QQGMSQMQRM LEACMDMQLE LQRSVRQEVS AALNRSAGDQ GMSAETSEDG
801: SRWSHVSKGT CCVCCDNHID ALLYRCGHMC TCSKCANELV RNGGKCPLCR APIIEVIRAY SIL

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JWA1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.