Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G405400.1 | Wheat | nucleus | 93.36 | 93.6 |
| TraesCS6D01G389100.1 | Wheat | nucleus | 88.15 | 88.38 |
| HORVU6Hr1G092920.1 | Barley | cytosol | 66.8 | 79.91 |
| Os02t0823300-01 | Rice | nucleus | 72.66 | 74.01 |
| EES06049 | Sorghum | nucleus | 69.92 | 70.38 |
| Zm00001d051871_P002 | Maize | nucleus | 65.62 | 60.0 |
| GSMUA_Achr1P00380_001 | Banana | nucleus | 36.85 | 42.49 |
| GSMUA_Achr8P11220_001 | Banana | nucleus | 38.93 | 39.71 |
| GSMUA_Achr5P12430_001 | Banana | nucleus | 36.98 | 38.74 |
| VIT_13s0019g05390.t01 | Wine grape | nucleus | 43.49 | 38.7 |
| Solyc03g071680.1.1 | Tomato | cytosol, mitochondrion, nucleus, plastid | 21.22 | 37.91 |
| PGSC0003DMT400070376 | Potato | nucleus | 42.19 | 37.5 |
| PGSC0003DMT400043571 | Potato | nucleus | 41.02 | 36.67 |
| Bra029846.1-P | Field mustard | nucleus | 35.42 | 35.19 |
| TraesCS4B01G003100.1 | Wheat | nucleus | 32.42 | 35.02 |
| Bra009452.1-P | Field mustard | nucleus | 38.15 | 35.01 |
| Bra034121.1-P | Field mustard | nucleus | 36.07 | 34.62 |
| AT5G04460.1 | Thale cress | nucleus | 38.54 | 34.3 |
| VIT_06s0061g00860.t01 | Wine grape | nucleus, plastid | 33.85 | 32.02 |
| KRH66429 | Soybean | nucleus | 8.59 | 30.99 |
| CDX71406 | Canola | cytosol | 19.92 | 27.37 |
| AT2G27950.2 | Thale cress | nucleus | 29.56 | 27.06 |
| PGSC0003DMT400018447 | Potato | nucleus | 25.65 | 25.82 |
| Bra011990.1-P | Field mustard | nucleus, plastid | 25.65 | 25.79 |
| PGSC0003DMT400001109 | Potato | mitochondrion | 28.12 | 25.0 |
| TraesCS2B01G251300.1 | Wheat | nucleus, plastid | 7.42 | 7.77 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G449800.2 | EnsemblPlantsGene:TraesCS6B01G449800 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR10044 | PANTHER:PTHR10044:SF106 | PFAM:PF13920 | PFscan:PS50089 |
| SEG:seg | SUPFAM:SSF57850 | TIGR:cd16647 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr6B:-:708781483..708786839
Molecular Weight (calculated)
86073.9 Da
IEP (calculated)
5.017
GRAVY (calculated)
-0.818
Length
768 amino acids
Sequence
(BLAST)
(BLAST)
001: MVDEYHHRMG AAAADFRRDL EDLVCDHLGG CYSPPPSSSS SLCSAAGGGG GGGAEGGGGV GGAGEEEAES SRRRRRESRL LSRWVARQAE EVLSSMEREV
101: ERRNRESELL ALTRLHPVST LDPSAFLLSS PPPPRPQAPS PAAPSSLLQM WRELEHRRAD AGQPFDREPS PDTPDRHRER VRQIARRLTT STDSPTAAAA
201: TATGEWLGET ERQRVRLVRE WVQMASQPRD ARAASRREEP TAAERERRGE PPRLRGRQAR TDVITRMSRE RQRELQGLSG YHIVSQFPQR SRSRIQGLLR
301: VRFLRNAVAP AEEERQPSVA ARELGQLRQS HRVSTLRSES AVSSQDVSLS DAPVAENVPL LGNDETEQGA EVGHLTVSED VAQTTPENVG LQEDNVDVAE
401: AESPATTSGD IVDMQVSQVD NGLQVEAERE TIFWQPSLDV RLDRWPNETA ENSDRNWEDN AEELHSEIAE DDDRENENLQ DEHDAWHDDE SHGTEENWQD
501: DDFHDAALDT GPIPRIENSF NLRDEANLHN MELRELLSRR SVSNLLSNGF GDSLEQLIRS YVQRRGHAPL NWNLDTAMPT ANAPNGNQEL VRNAENRQFQ
601: GPANRPALVI PPPPLPPRQP LWHRDLRHNT WSSRHRVHQE LDAINDLKAD MNKLQQGMSS MQRMLEACMD MQLELQRSVR QEVSAALSRF PGPEGCMFLD
701: LHDDGTRWDQ VRKGTCCVCC DTQIDSLLYR CGHMCTCSKC ANELVRSGGK CPLCRAPIVE VVRAYAVL
101: ERRNRESELL ALTRLHPVST LDPSAFLLSS PPPPRPQAPS PAAPSSLLQM WRELEHRRAD AGQPFDREPS PDTPDRHRER VRQIARRLTT STDSPTAAAA
201: TATGEWLGET ERQRVRLVRE WVQMASQPRD ARAASRREEP TAAERERRGE PPRLRGRQAR TDVITRMSRE RQRELQGLSG YHIVSQFPQR SRSRIQGLLR
301: VRFLRNAVAP AEEERQPSVA ARELGQLRQS HRVSTLRSES AVSSQDVSLS DAPVAENVPL LGNDETEQGA EVGHLTVSED VAQTTPENVG LQEDNVDVAE
401: AESPATTSGD IVDMQVSQVD NGLQVEAERE TIFWQPSLDV RLDRWPNETA ENSDRNWEDN AEELHSEIAE DDDRENENLQ DEHDAWHDDE SHGTEENWQD
501: DDFHDAALDT GPIPRIENSF NLRDEANLHN MELRELLSRR SVSNLLSNGF GDSLEQLIRS YVQRRGHAPL NWNLDTAMPT ANAPNGNQEL VRNAENRQFQ
601: GPANRPALVI PPPPLPPRQP LWHRDLRHNT WSSRHRVHQE LDAINDLKAD MNKLQQGMSS MQRMLEACMD MQLELQRSVR QEVSAALSRF PGPEGCMFLD
701: LHDDGTRWDQ VRKGTCCVCC DTQIDSLLYR CGHMCTCSKC ANELVRSGGK CPLCRAPIVE VVRAYAVL
001: MTSIQPLLQK SESRDDVRAE FERGLEEFMR GHLDECISFG SCSSVHNPED EDNEDDQLVR RRRRSELEGD NLAESSAARR RQSQILSRWA ARQAQEMITT
101: IERRNRESEL IALAGLQTVS MLDSSFLRES QSQSPSSRRQ GAASERPNTQ ASGILQMWRE LEDEHVLNRA RERVRERLRQ QRSVESNTNL SSSIASESQL
201: SENNGSLRDS SESENDFGSW SHDRNEHGDN NNTSSREQSP DLGDGERERV RHIARGWMDS RINDHSSNVR QRDDNRRPEW LGDTERERVR IIREWMQMTS
301: QQRGGARATP REDQRSTSEA DRNHDAAPQV DRVRVGLAVN HEEGQPPHVR RDLRRVRGRQ ALLDLLMRAE RERQRELQGL LEHRAVSDFA HRNRIQSLLR
401: GRFLRNERPT VPERTPSMAS RELLQLRERQ TVSGLREGFH NGRENIVHEN TSNTDNDNSN TSTNALAIAI TAGNSQRVTD ESSTSSRQGN DSPILPDNSE
501: SNLANADRDW EEDTNQRRIW QENVPVDERP NLEQTTLTQF DGYDNTDINR DETSVSDMHR EASGFADDEY RTQEAHGVWH ENSSRQSDGN WPGTRSEALR
601: SRRVVQLRRL NRFHPPEDDN VYSMELRELL SRRSVSNLLH SGFRESLDQL IQSYAERRGH THVDWDLHAN LQTAIPDSPE RDTDHQVFVR NDNQLNGING
701: SQLLPTPPAP PPQPIWHQDL HHTSWSRHSM HRSEIEWEVM NDLRGDVARL QQGMSQMQRM LEACMDMQLE LQRSVRQEVS AALNRSAGDQ GMSAETSEDG
801: SRWSHVSKGT CCVCCDNHID ALLYRCGHMC TCSKCANELV RNGGKCPLCR APIIEVIRAY SIL
101: IERRNRESEL IALAGLQTVS MLDSSFLRES QSQSPSSRRQ GAASERPNTQ ASGILQMWRE LEDEHVLNRA RERVRERLRQ QRSVESNTNL SSSIASESQL
201: SENNGSLRDS SESENDFGSW SHDRNEHGDN NNTSSREQSP DLGDGERERV RHIARGWMDS RINDHSSNVR QRDDNRRPEW LGDTERERVR IIREWMQMTS
301: QQRGGARATP REDQRSTSEA DRNHDAAPQV DRVRVGLAVN HEEGQPPHVR RDLRRVRGRQ ALLDLLMRAE RERQRELQGL LEHRAVSDFA HRNRIQSLLR
401: GRFLRNERPT VPERTPSMAS RELLQLRERQ TVSGLREGFH NGRENIVHEN TSNTDNDNSN TSTNALAIAI TAGNSQRVTD ESSTSSRQGN DSPILPDNSE
501: SNLANADRDW EEDTNQRRIW QENVPVDERP NLEQTTLTQF DGYDNTDINR DETSVSDMHR EASGFADDEY RTQEAHGVWH ENSSRQSDGN WPGTRSEALR
601: SRRVVQLRRL NRFHPPEDDN VYSMELRELL SRRSVSNLLH SGFRESLDQL IQSYAERRGH THVDWDLHAN LQTAIPDSPE RDTDHQVFVR NDNQLNGING
701: SQLLPTPPAP PPQPIWHQDL HHTSWSRHSM HRSEIEWEVM NDLRGDVARL QQGMSQMQRM LEACMDMQLE LQRSVRQEVS AALNRSAGDQ GMSAETSEDG
801: SRWSHVSKGT CCVCCDNHID ALLYRCGHMC TCSKCANELV RNGGKCPLCR APIIEVIRAY SIL
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JWA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.