Factsheet for GSMUA_Achr1P00380_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P12430_001	Banana	nucleus	67.42	61.26
GSMUA_Achr1P17370_001	Banana	nucleus	50.75	48.56
GSMUA_AchrUn_...	Banana	nucleus	51.5	44.49
GSMUA_Achr8P11220_001	Banana	nucleus	49.85	44.09
GSMUA_Achr11P...	Banana	nucleus	44.59	42.01
Solyc03g071680.1.1	Tomato	cytosol, mitochondrion, nucleus, plastid	27.03	41.86
Zm00001d019766_P001	Maize	nucleus	12.16	40.5
GSMUA_Achr2P03990_001	Banana	nucleus	41.89	39.69
HORVU4Hr1G000090.6	Barley	cytosol, mitochondrion, nucleus	32.28	39.23
EES06049	Sorghum	nucleus	44.74	39.06
Os02t0823300-01	Rice	nucleus	43.99	38.86
KXG35138	Sorghum	nucleus	40.69	38.71
VIT_13s0019g05390.t01	Wine grape	nucleus	50.0	38.59
PGSC0003DMT400070376	Potato	nucleus	48.8	37.62
TraesCS4D01G003000.2	Wheat	nucleus	39.79	37.22
TraesCS6D01G389100.1	Wheat	nucleus	42.64	37.08
TraesCS6A01G405400.1	Wheat	nucleus	42.64	37.08
TraesCS6B01G449800.2	Wheat	nucleus	42.49	36.85
HORVU6Hr1G092920.1	Barley	cytosol	35.44	36.76
VIT_06s0061g00860.t01	Wine grape	nucleus, plastid	44.74	36.7
HORVU4Hr1G086680.2	Barley	mitochondrion	23.72	36.32
PGSC0003DMT400043571	Potato	nucleus	46.85	36.32
KRH66429	Soybean	nucleus	11.56	36.15
Bra009452.1-P	Field mustard	nucleus	44.29	35.24
AT5G04460.1	Thale cress	nucleus	45.5	35.11
TraesCS4A01G311200.1	Wheat	nucleus	37.69	35.1
Bra034121.1-P	Field mustard	nucleus	41.89	34.88
Zm00001d051871_P002	Maize	nucleus	43.54	34.52
OQU93435	Sorghum	nucleus	33.78	34.46
TraesCS4B01G003100.1	Wheat	nucleus	36.64	34.32
Bra029846.1-P	Field mustard	nucleus	39.04	33.64
Zm00001d027308_P001	Maize	nucleus	32.88	32.74
TraesCS4D01G354300.1	Wheat	plastid	34.08	32.02
TraesCS5A01G529500.1	Wheat	plastid	32.73	30.36
Bra011990.1-P	Field mustard	nucleus, plastid	32.88	28.66
PGSC0003DMT400018447	Potato	nucleus	31.98	27.92
CDX71406	Canola	cytosol	23.42	27.91
PGSC0003DMT400001109	Potato	mitochondrion	34.68	26.74
AT2G27950.2	Thale cress	nucleus	33.63	26.7
GSMUA_Achr4P33210_001	Banana	nucleus	8.41	10.31
GSMUA_Achr7P00390_001	Banana	nucleus	9.61	8.8

Protein Annotations

EnsemblPlants:GSMUA_Achr1P00380_001	EnsemblPlants:GSMUA_Achr1T00380_001	EnsemblPlantsGene:GSMUA_Achr1G00380_001	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR10044	PANTHER:PTHR10044:SF106	PFAM:PF13920
PFscan:PS50089	SEG:seg	SUPFAM:SSF57850	UniParc:UPI000295ACFC	UniProt:M0RVU6	MapMan:35.2

Description

protein binding protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G00380_001]

Coordinates

chr1:+:320683..327363

Molecular Weight (calculated)

76219.2 Da

IEP (calculated)

4.945

GRAVY (calculated)

-0.852

Length

666 amino acids

Sequence
(BLAST)

001: MALARLHAVS MLDASFLRES RRAQSSVERP VAARASSVLQ RWRELEDESA ARDHGGDREM ERERVTQIVS GWMTEIAMAD TAQVLRGSGS SRSEWLGERE
101: RERVRLVREW MQTVSQQRDV RASRREEQAR DGVITNREDR RPECTQRNLL RLRGRQARLD LIMRNVRERE RELQDLSQHR PVSHFGHRIR IQSVLRGRFL
201: RNGRSVEDGQ QHSVAARELG QLRQRQTVSG FREGFRSQES SIVTDQASSQ SADGDSVNIS GNDISVTNAL EVSDVTYDQF QASDDDIDIH QTAEVDTTVQ
301: MESNMQSSDM GGREYAIQDD NWPEDDAEHG QGDWQQPIEV GLSVQHDGPV EEPDRNWHEN VDQEWLHETP EDEDRQGTLL LEAHQHWHSD NSQATEANWQ
401: DGPSDSLNDQ HSFRVIRNGV ISSDDDNVYS MELQELLSRR SVSNLLHSGF RESLDQLVQS YIQRQGRDAF QWDMQSAMPD HVSPEEDQRQ QRDDLIQSQQ
501: DSVTRPLHTP PTPPTPPPLP LWHSELHNSW SRQHIRRTDI EWDIVNDLRA DMAKLQQVMC HMQRMLEACL DMQLELQRAV RQEVSAALNR SVGEHVGESS
601: EDGIKWSNVR KGICCVCCDN QIDSLLYRCG HMCTCSGCAN ELAQGGGKCP LCHAPIVEVV RAYSIV

Best Arabidopsis Sequence Match ( AT5G04460.6 )
(BLAST)

001: MTSIQPLLQK SESRDDVRAE FERGLEEFMR GHLDECISFG SCSSVHNPED EDNEDDQLVR RRRRSELEGD NLAESSAARR RQSQILSRWA ARQAQEMITT
101: IERRNRESEL IALAGLQTVS MLDSSFLRES QSQSPSSRRQ GAASERPNTQ ASGILQMWRE LEDEHVLNRA RERVRERLRQ QRSVESNTNL SSSIASESQL
201: SENNGSLRDS SESENDFGSW SHDRNEHGDN NNTSSREQSP DLGDGERERV RHIARGWMDS RINDHSSNVR QRDDNRRPEW LGDTERERVR IIREWMQMTS
301: QQRGGARATP REDQRSTSEA DRNHDAAPQV DRVRVGLAVN HEEGQPPHVR RDLRRVRGRQ ALLDLLMRAE RERQRELQGL LEHRAVSDFA HRNRIQSLLR
401: GRFLRNERPT VPERTPSMAS RELLQLRERQ TVSGLREGFH NGRENIVHEN TSNTDNDNSN TSTNALAIAI TAGNSQRVTD ESSTSSRQGN DSPILPDNSE
501: SNLANADRDW EEDTNQRRIW QENVPVDERP NLEQTTLTQF DGYDNTDINR DETSVSDMHR EASGFADDEY RTQEAHGVWH ENSSRQSDGN WPGTRSEALR
601: SRRVVQLRRL NRFHPPEDDN VYSMELRELL SRRSVSNLLH SGFRESLDQL IQSYAERRGH THVDWDLHAN LQTAIPDSPE RDTDHQVFVR NDNQLNGING
701: SQLLPTPPAP PPQPIWHQDL HHTSWSRHSM HRSEIEWEVM NDLRGDVARL QQGMSQMQRM LEACMDMQLE LQRSVRQEVS AALNRSAGDQ GMSAETSEDG
801: SRWSHVSKGT CCVCCDNHID ALLYRCGHMC TCSKCANELV RNGGKCPLCR APIIEVIRAY SIL

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JWA1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.