Factsheet for Bra034121.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41355	Canola	nucleus	84.0	89.24
Bra029846.1-P	Field mustard	nucleus	64.88	67.14
Bra009452.1-P	Field mustard	nucleus	56.62	54.12
Solyc11g007910.1.1	Tomato	nucleus	52.12	49.76
VIT_13s0019g05390.t01	Wine grape	nucleus	53.38	49.48
KRG92104	Soybean	nucleus	52.38	49.41
KRH34682	Soybean	nucleus	51.88	48.88
PGSC0003DMT400070376	Potato	nucleus	52.25	48.38
Solyc03g071670.1.1	Tomato	nucleus	26.25	46.98
PGSC0003DMT400043571	Potato	nucleus	49.75	46.33
GSMUA_AchrUn_...	Banana	nucleus	43.0	44.62
GSMUA_Achr8P11220_001	Banana	nucleus	41.0	43.56
Zm00001d019766_P001	Maize	nucleus	10.62	42.5
GSMUA_Achr1P00380_001	Banana	nucleus	34.88	41.89
GSMUA_Achr1P17370_001	Banana	nucleus	36.12	41.52
GSMUA_Achr11P...	Banana	nucleus	35.62	40.31
Os09t0570500-01	Rice	nucleus	22.0	39.02
GSMUA_Achr5P12430_001	Banana	nucleus	34.62	37.79
Os02t0823300-01	Rice	nucleus	35.38	37.53
OQU93435	Sorghum	nucleus	29.75	36.45
TraesCS6D01G389100.1	Wheat	nucleus	34.75	36.29
KXG35138	Sorghum	nucleus	31.75	36.29
TraesCS6B01G449800.2	Wheat	nucleus	34.62	36.07
TraesCS6A01G405400.1	Wheat	nucleus	34.5	36.03
Zm00001d019765_P001	Maize	nucleus	16.75	35.83
EES06049	Sorghum	nucleus	34.12	35.78
TraesCS4D01G003000.2	Wheat	nucleus	31.12	34.97
HORVU4Hr1G000090.6	Barley	cytosol, mitochondrion, nucleus	23.88	34.85
GSMUA_Achr2P03990_001	Banana	nucleus	29.75	33.85
Zm00001d027308_P001	Maize	nucleus	28.12	33.63
TraesCS4B01G003100.1	Wheat	nucleus	29.5	33.19
TraesCS4A01G311200.1	Wheat	nucleus	29.0	32.45
Zm00001d051871_P002	Maize	nucleus	34.0	32.38
TraesCS5A01G529500.1	Wheat	plastid	28.88	32.17
HORVU6Hr1G092920.1	Barley	cytosol	25.75	32.09
TraesCS4D01G354300.1	Wheat	plastid	28.38	32.02
HORVU4Hr1G086680.2	Barley	mitochondrion	17.25	31.72
Bra011990.1-P	Field mustard	nucleus, plastid	30.0	31.41
Bra021939.1-P	Field mustard	nucleus, plastid	9.25	11.88
Bra023148.1-P	Field mustard	nucleus	8.62	9.79
Bra005381.1-P	Field mustard	nucleus	7.88	9.72
Bra039871.1-P	Field mustard	nucleus	8.12	9.26
Bra013447.1-P	Field mustard	nucleus	9.5	6.15

Protein Annotations

EnsemblPlants:Bra034121.1	EnsemblPlants:Bra034121.1-P	EnsemblPlantsGene:Bra034121	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR10044	PANTHER:PTHR10044:SF106	PFAM:PF13920
PFscan:PS50089	SEG:seg	SUPFAM:SSF57850	UniParc:UPI0002543FC4	UniProt:M4EZ78	MapMan:35.2

Description

AT5G04460 (E=9e-177) | protein binding / zinc ion binding

Coordinates

chrA01:-:27354659..27357778

Molecular Weight (calculated)

90825.8 Da

IEP (calculated)

5.820

GRAVY (calculated)

-1.043

Length

800 amino acids

Sequence
(BLAST)

001: MTDIDPLHQK PDSMDGYEDF MDEDCISFES CSTIHNPDND HPHDQDDEQP LRRRRRSDHL HQGGGDDIAE SSAARQSRIL SRWAARQAQE MITTIERRNR
101: ESELIAIAGL HAVSTLDSSF LREETQASPP TSSGRAPERP RPRTQASGIL QMWRELEDEH VLNRARERMR LRVRSADVAQ AESQVSESEN GYGSSSREQS
201: PDLGDVESER VRNIVRGLTT DHSSNVRDRN HDNRRGEWLG DTERERVRII REWMQMTSQQ RGGGGGGGGA RASRREDQQR SLGSQDERAQ VQSEEGRREH
301: TRRDLRRLRG RQALVDLLMR IERERQRELQ GLLEHRAVSD FAHRNRIQSL LRGRFLRSET PAEEVRAPSV AASEIRQLRE RQTVSGLREG ARDRPESNTN
401: ADNINTTRSN QITANTSEDS QLLNESLNSS RQGNGTPLLP NDLGNSGSNQ PNPDRNWDGD TSQERAWSEV FTTDERRDLL QATLSQFSER DNGPENSVGD
501: LHQDGTGNNS NETVIVEGQS VWPADNSRQS DGNQPETRFG GSRTRRVVPM RRLNRLHLPD DDSVNNSIEL RELLSRRSVS NLLRSGFREN LDQLIQSYVE
601: RRGGGLAHID WDFQPETLDS QEHRREQQGF LQVEDQLDGI NQSQTLPAPP MPPPQPIWHH TSYARSLHRS EFEWETMNDL RGDMARLQQG MSHMQRTLET
701: CMDMQSELQR LVRQEVSAAL NQSPSDKGLG PGTSEDGSRW AHVRNGTCCV CCDADIDALL YRCGHMCTCS KCGYELVRTG GKCPLCRAPI LEVIRAYSIA

Best Arabidopsis Sequence Match ( AT5G04460.6 )
(BLAST)

001: MTSIQPLLQK SESRDDVRAE FERGLEEFMR GHLDECISFG SCSSVHNPED EDNEDDQLVR RRRRSELEGD NLAESSAARR RQSQILSRWA ARQAQEMITT
101: IERRNRESEL IALAGLQTVS MLDSSFLRES QSQSPSSRRQ GAASERPNTQ ASGILQMWRE LEDEHVLNRA RERVRERLRQ QRSVESNTNL SSSIASESQL
201: SENNGSLRDS SESENDFGSW SHDRNEHGDN NNTSSREQSP DLGDGERERV RHIARGWMDS RINDHSSNVR QRDDNRRPEW LGDTERERVR IIREWMQMTS
301: QQRGGARATP REDQRSTSEA DRNHDAAPQV DRVRVGLAVN HEEGQPPHVR RDLRRVRGRQ ALLDLLMRAE RERQRELQGL LEHRAVSDFA HRNRIQSLLR
401: GRFLRNERPT VPERTPSMAS RELLQLRERQ TVSGLREGFH NGRENIVHEN TSNTDNDNSN TSTNALAIAI TAGNSQRVTD ESSTSSRQGN DSPILPDNSE
501: SNLANADRDW EEDTNQRRIW QENVPVDERP NLEQTTLTQF DGYDNTDINR DETSVSDMHR EASGFADDEY RTQEAHGVWH ENSSRQSDGN WPGTRSEALR
601: SRRVVQLRRL NRFHPPEDDN VYSMELRELL SRRSVSNLLH SGFRESLDQL IQSYAERRGH THVDWDLHAN LQTAIPDSPE RDTDHQVFVR NDNQLNGING
701: SQLLPTPPAP PPQPIWHQDL HHTSWSRHSM HRSEIEWEVM NDLRGDVARL QQGMSQMQRM LEACMDMQLE LQRSVRQEVS AALNRSAGDQ GMSAETSEDG
801: SRWSHVSKGT CCVCCDNHID ALLYRCGHMC TCSKCANELV RNGGKCPLCR APIIEVIRAY SIL

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JWA1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.