Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G354300.1 | Wheat | plastid | 71.95 | 44.15 |
| TraesCS5A01G529500.1 | Wheat | plastid | 68.51 | 41.5 |
| Solyc03g071680.1.1 | Tomato | cytosol, mitochondrion, nucleus, plastid | 28.97 | 29.3 |
| HORVU4Hr1G000090.6 | Barley | cytosol, mitochondrion, nucleus | 35.17 | 27.92 |
| OQU93435 | Sorghum | nucleus | 39.31 | 26.19 |
| Zm00001d027308_P001 | Maize | nucleus | 37.47 | 24.36 |
| GSMUA_Achr1P00380_001 | Banana | nucleus | 36.32 | 23.72 |
| GSMUA_Achr5P12430_001 | Banana | nucleus | 37.01 | 21.96 |
| HORVU6Hr1G092920.1 | Barley | cytosol | 32.18 | 21.81 |
| KRH66429 | Soybean | nucleus | 10.11 | 20.66 |
| GSMUA_Achr8P11220_001 | Banana | nucleus | 34.71 | 20.05 |
| CDX71406 | Canola | cytosol | 25.75 | 20.04 |
| PGSC0003DMT400070376 | Potato | nucleus | 37.47 | 18.87 |
| Bra009452.1-P | Field mustard | nucleus | 35.63 | 18.52 |
| VIT_13s0019g05390.t01 | Wine grape | nucleus | 36.55 | 18.42 |
| VIT_06s0061g00860.t01 | Wine grape | nucleus, plastid | 33.1 | 17.73 |
| PGSC0003DMT400043571 | Potato | nucleus | 34.71 | 17.58 |
| Bra034121.1-P | Field mustard | nucleus | 31.72 | 17.25 |
| AT5G04460.1 | Thale cress | nucleus | 34.02 | 17.15 |
| Bra029846.1-P | Field mustard | nucleus | 30.34 | 17.08 |
| PGSC0003DMT400018447 | Potato | nucleus | 27.82 | 15.86 |
| PGSC0003DMT400001109 | Potato | mitochondrion | 30.34 | 15.28 |
| AT2G27950.2 | Thale cress | nucleus | 28.74 | 14.9 |
| Bra011990.1-P | Field mustard | nucleus, plastid | 25.06 | 14.27 |
| HORVU2Hr1G048520.1 | Barley | plastid | 6.21 | 4.2 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G086680.2 | EnsemblPlantsGene:HORVU4Hr1G086680 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR10044 | PANTHER:PTHR10044:SF106 | PFAM:PF13920 | PFscan:PS50089 | SEG:seg |
| SUPFAM:SSF57850 | UniParc:UPI000B47EF6D | UniProt:A0A287PZT7 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chrchr4H:+:634881433..634883440
Molecular Weight (calculated)
48443.4 Da
IEP (calculated)
4.628
GRAVY (calculated)
-0.918
Length
435 amino acids
Sequence
(BLAST)
(BLAST)
001: SVLRGRIFLG GRPRQDGGPI STAAGQEGQI TQSHHRPGTG AENITSDQAT NGDHSSLPED DNQHLENASA SHEIQALQPT EDQSGNVPNT HDALQDGHLD
101: QEQHVHGYQE YSSDSGSSDQ SGEQTGSSSS DNGGAQEEAI AYVQPTPSVQ WRGESSGASG QEAEEEEEDE DEEEWHVIDN PEAEAQQWRP DLGGFARHNR
201: LQEDALYGMY RAELRELLSR RSVSNLLSSG FRESLDQLVH SYAQRQEEHD PPAPLNQDHV QHHRIHGADQ AEHAAQPPAG HRPQRRWRMM PPGRDWSRQP
301: MDRPDEFEVD EAIHDLRDDM AVLQRGMAST QQMLQACMEM QVELQRSIRQ EVASAMNGSL SLQGTVRWYD DGSQWELVRK GTCCICCDSQ IDSLLYRCGH
401: MCTCSKCARE LLRGAGKCPL CRAPIVEVVR AYSII
101: QEQHVHGYQE YSSDSGSSDQ SGEQTGSSSS DNGGAQEEAI AYVQPTPSVQ WRGESSGASG QEAEEEEEDE DEEEWHVIDN PEAEAQQWRP DLGGFARHNR
201: LQEDALYGMY RAELRELLSR RSVSNLLSSG FRESLDQLVH SYAQRQEEHD PPAPLNQDHV QHHRIHGADQ AEHAAQPPAG HRPQRRWRMM PPGRDWSRQP
301: MDRPDEFEVD EAIHDLRDDM AVLQRGMAST QQMLQACMEM QVELQRSIRQ EVASAMNGSL SLQGTVRWYD DGSQWELVRK GTCCICCDSQ IDSLLYRCGH
401: MCTCSKCARE LLRGAGKCPL CRAPIVEVVR AYSII
001: MAIAGLQNIL VIDSSFRRDS EVQATRQREN EGRSSVRASS LLQMWRELED DHVMGHARER DGERRSVSSP SNTMRGNGCD SNISAHDIVR DSVNLGENEL
101: GGWSPTQSHV GSHNSSEDLG PFQSEHFSDL GMGERERVRQ IFREWTSSGT GQHTDSASQA TNSSRAEWLG ETEQERVRII REMVQMNSQQ RPALGDLREE
201: QPIEGANQIE RVLDGIVVNP NSIQNEHARR GIRKLCGRQV WVDMLKMAEM ERQRELEGLM QHHAVSNFAH RNRIQALLRG RFLRNGDNDD KEKPTSSAAT
301: ELGFLRERHT VSELREEFIS RLDRSASGQA SSSHSETSSN AETDHNRGEQ NDLNCLDSIN DADGGSDQNG READNQSSLD EITNSGRCCS RSTSLEERTA
401: RVEGWQRSEI DDFSQRRNDT EVDLNATGCS SSSIHGDEIR YGCQLRETIE IPYEQSLQIS EEIATMGPIN RTTNFQENLG ESINLTVTLE EQTVEQMENE
501: ESDWQLINGA TSAWRDDAEE EADTDVPENF PNQLSQLSSV DEDREANILG ELTEMQPDDD AASLQSTIQD WSEEHSDQDT VSMGRATTFF PPDDGNENNM
601: ELRELSSRRR VSNLLQSGFR ENLSQLIQSY MDRRSQNPVD WEEAETYSDH TIVGEDTEQQ DDAQSGGQEL DAVESPPLTL PSPVIPIQPR WDHDRSHSNW
701: PAHDLHQGIG MDWDSINDLR VDMGRIQQRM DNLQRMLEAC MEMQLELQRS IRQEVSAAMH RSTDQPGPSK DTASYESKWE YVRKGICCVC CESNIDSLLY
801: RCGHMNTCEK CAKKLVEAGG KCPMCQAPVI EVVRAYSIL
101: GGWSPTQSHV GSHNSSEDLG PFQSEHFSDL GMGERERVRQ IFREWTSSGT GQHTDSASQA TNSSRAEWLG ETEQERVRII REMVQMNSQQ RPALGDLREE
201: QPIEGANQIE RVLDGIVVNP NSIQNEHARR GIRKLCGRQV WVDMLKMAEM ERQRELEGLM QHHAVSNFAH RNRIQALLRG RFLRNGDNDD KEKPTSSAAT
301: ELGFLRERHT VSELREEFIS RLDRSASGQA SSSHSETSSN AETDHNRGEQ NDLNCLDSIN DADGGSDQNG READNQSSLD EITNSGRCCS RSTSLEERTA
401: RVEGWQRSEI DDFSQRRNDT EVDLNATGCS SSSIHGDEIR YGCQLRETIE IPYEQSLQIS EEIATMGPIN RTTNFQENLG ESINLTVTLE EQTVEQMENE
501: ESDWQLINGA TSAWRDDAEE EADTDVPENF PNQLSQLSSV DEDREANILG ELTEMQPDDD AASLQSTIQD WSEEHSDQDT VSMGRATTFF PPDDGNENNM
601: ELRELSSRRR VSNLLQSGFR ENLSQLIQSY MDRRSQNPVD WEEAETYSDH TIVGEDTEQQ DDAQSGGQEL DAVESPPLTL PSPVIPIQPR WDHDRSHSNW
701: PAHDLHQGIG MDWDSINDLR VDMGRIQQRM DNLQRMLEAC MEMQLELQRS IRQEVSAAMH RSTDQPGPSK DTASYESKWE YVRKGICCVC CESNIDSLLY
801: RCGHMNTCEK CAKKLVEAGG KCPMCQAPVI EVVRAYSIL
Arabidopsis Description
Ring/U-Box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IHN6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.