CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d019765_P001	Maize	nucleus	39.44	22.46
Solyc03g071680.1.1	Tomato	cytosol, mitochondrion, nucleus, plastid	42.25	20.93
KRH25125	Soybean	nucleus	74.18	18.5
Os09t0570500-01	Rice	nucleus	38.97	18.4
KRH30548	Soybean	nucleus	71.83	17.79
HORVU4Hr1G000090.6	Barley	cytosol, mitochondrion, nucleus	38.03	14.78
KRH26545	Soybean	nucleus	53.99	14.45
KRH22786	Soybean	nucleus	55.87	14.02
CDX71406	Canola	cytosol	33.8	12.88
KXG35138	Sorghum	nucleus	41.78	12.71
GSMUA_Achr5P12430_001	Banana	nucleus	42.25	12.28
GSMUA_Achr1P17370_001	Banana	nucleus	38.97	11.93
GSMUA_AchrUn_...	Banana	nucleus	42.25	11.67
TraesCS4D01G003000.2	Wheat	nucleus	38.97	11.66
GSMUA_Achr1P00380_001	Banana	nucleus	36.15	11.56
TraesCS4A01G311200.1	Wheat	nucleus	38.03	11.33
GSMUA_Achr8P11220_001	Banana	nucleus	39.91	11.29
TraesCS4B01G003100.1	Wheat	nucleus	37.56	11.25
KRH34682	Soybean	nucleus	44.13	11.07
KRG92104	Soybean	nucleus	43.66	10.97
GSMUA_Achr11P...	Banana	nucleus	35.68	10.75
EES06049	Sorghum	nucleus	37.56	10.48
HORVU6Hr1G092920.1	Barley	cytosol	31.46	10.44
HORVU4Hr1G086680.2	Barley	mitochondrion	20.66	10.11
GSMUA_Achr2P03990_001	Banana	nucleus	30.05	9.1
OQU93435	Sorghum	nucleus	27.7	9.04
TraesCS6A01G405400.1	Wheat	nucleus	31.92	8.88
TraesCS6D01G389100.1	Wheat	nucleus	31.92	8.88
TraesCS6B01G449800.2	Wheat	nucleus	30.99	8.59
TraesCS5A01G529500.1	Wheat	plastid	24.88	7.38
TraesCS4D01G354300.1	Wheat	plastid	24.41	7.33
KRH12155	Soybean	nucleus	3.29	0.76
KRH37161	Soybean	nucleus	2.82	0.65

Protein Annotations

MapMan:35.2	UniProt:A0A0R0KH42	EMBL:ACUP02001961	ncoils:Coil	EnsemblPlantsGene:GLYMA_03G105800	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009966
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
EnsemblPlants:KRH66429	ProteinID:KRH66429	ProteinID:KRH66429.1	PANTHER:PTHR10044	PANTHER:PTHR10044:SF106	UniParc:UPI0006EDC6E0
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:30371188..30372468

Molecular Weight (calculated)

25022.3 Da

IEP (calculated)

4.319

GRAVY (calculated)

-0.808

Length

213 amino acids

Sequence
(BLAST)

001: MIQTLVQLMR TLEKIPEEQM SGLTTVWENK DGENSRLQES HEVWQEDGGF QEAVENWLGG PSDHESAPVG RIRGFYFLED DNVYSVELRE LLNRQGHANI
101: NWELQETTIS SASVEQDLEQ HSRDQIVGQE EVTVSPLNLP SLPIPPPLPI WDLHHHRDNW SQNDINNQRL DWEMINDLRI DMARLQQRMN NMQRMLEACM
201: DMHLELQRSM RQE

Best Arabidopsis Sequence Match ( AT2G27950.1 )
(BLAST)

001: MAIAGLQNIL VIDSSFRRDS EVQATRQREN EGRSSVRASS LLQMWRELED DHVMGHARER DGERRSVSSP SNTMRGNGCD SNISAHDIVR DSVNLGENEL
101: GGWSPTQSHV GSHNSSEDLG PFQSEHFSDL GMGERERVRQ IFREWTSSGT GQHTDSASQA TNSSRAEWLG ETEQERVRII REMVQMNSQQ RPALGDLREE
201: QPIEGANQIE RVLDGIVVNP NSIQNEHARR GIRKLCGRQV WVDMLKMAEM ERQRELEGLM QHHAVSNFAH RNRIQALLRG RFLRNGDNDD KEKPTSSAAT
301: ELGFLRERHT VSELREEFIS RLDRSASGQA SSSHSETSSN AETDHNRGEQ NDLNCLDSIN DADGGSDQNG READNQSSLD EITNSGRCCS RSTSLEERTA
401: RVEGWQRSEI DDFSQRRNDT EVDLNATGCS SSSIHGDEIR YGCQLRETIE IPYEQSLQIS EEIATMGPIN RTTNFQENLG ESINLTVTLE EQTVEQMENE
501: ESDWQLINGA TSAWRDDAEE EADTDVPENF PNQLSQLSSV DEDREANILG ELTEMQPDDD AASLQSTIQD WSEEHSDQDT VSMGRATTFF PPDDGNENNM
601: ELRELSSRRR VSNLLQSGFR ENLSQLIQSY MDRRSQNPVD WEEAETYSDH TIVGEDTEQQ DDAQSGGQEL DAVESPPLTL PSPVIPIQPR WDHDRSHSNW
701: PAHDLHQGIG MDWDSINDLR VDMGRIQQRM DNLQRMLEAC MEMQLELQRS IRQEVSAAMH RSTDQPGPSK DTASYESKWE YVRKGICCVC CESNIDSLLY
801: RCGHMNTCEK CAKKLVEAGG KCPMCQAPVI EVVRAYSIL

Arabidopsis Description

Ring/U-Box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IHN6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.