Factsheet for PGSC0003DMT400008297

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g005130.2.1	Tomato	cytosol	99.32	99.32
VIT_11s0149g00410.t01	Wine grape	cytosol	57.97	82.61
KRH20089	Soybean	cytosol	80.0	80.55
AT4G31020.2	Thale cress	cytosol	77.29	77.55
CDX72285	Canola	cytosol	77.29	77.55
Bra024028.1-P	Field mustard	cytosol	77.29	77.55
CDY13406	Canola	cytosol	76.95	77.21
CDX68717	Canola	cytosol	75.25	75.51
Bra011242.1-P	Field mustard	cytosol	75.25	75.51
CDY28238	Canola	cytosol	75.25	75.51
CDY51485	Canola	cytosol	74.92	75.17
GSMUA_Achr5P04500_001	Banana	cytosol	74.92	74.92
CDY23273	Canola	cytosol	74.58	74.83
Bra010259.1-P	Field mustard	cytosol	74.58	74.83
AT2G24320.2	Thale cress	cytosol	74.24	74.74
CDY55247	Canola	cytosol	74.24	74.49
Os02t0796600-01	Rice	cytosol	66.44	74.24
CDY20302	Canola	cytosol	66.44	74.24
GSMUA_Achr9P13240_001	Banana	cytosol	74.24	74.24
KRH12940	Soybean	cytosol	74.58	74.07
Bra007861.1-P	Field mustard	cytosol	73.56	73.81
CDY34778	Canola	cytosol	73.56	73.81
GSMUA_Achr11P...	Banana	cytosol	73.56	73.56
VIT_11s0206g00050.t01	Wine grape	cytosol	59.66	73.33
HORVU6Hr1G085730.5	Barley	mitochondrion	62.37	73.31
GSMUA_Achr3P04580_001	Banana	cytosol	72.54	72.54
Bra032105.1-P	Field mustard	cytosol	71.86	72.11
TraesCS6B01G392900.1	Wheat	cytosol	67.8	71.94
TraesCS6A01G360000.1	Wheat	cytosol	67.12	71.74
TraesCS6D01G343000.1	Wheat	cytosol	67.46	71.58
CDY20301	Canola	cytosol	71.53	71.53
CDY46139	Canola	cytosol	56.61	66.27
KXG31273	Sorghum	plastid	67.12	65.13
PGSC0003DMT400068320	Potato	cytosol	56.27	59.07
PGSC0003DMT400067845	Potato	cytosol, plastid	59.32	51.62
PGSC0003DMT400006272	Potato	plastid	57.29	49.56
PGSC0003DMT400068318	Potato	plastid	18.64	48.67
PGSC0003DMT400017818	Potato	cytosol	60.68	48.25
PGSC0003DMT400039199	Potato	cytosol	57.97	46.09
PGSC0003DMT400003495	Potato	plastid	57.63	45.09
PGSC0003DMT400006166	Potato	plasma membrane, plastid	56.95	43.08
PGSC0003DMT400062645	Potato	mitochondrion	57.29	42.68
PGSC0003DMT400050553	Potato	cytosol	51.53	40.97

Protein Annotations

EnsemblPlants:PGSC0003DMT400008297	EnsemblPlantsGene:PGSC0003DMG400003197	EntrezGene:102598793	Gene3D:3.40.50.1820	InterPro:AB_hydrolase	InterPro:AB_hydrolase_1
InterPro:IPR029058	PANTHER:PTHR12277	PANTHER:PTHR12277:SF118	PFAM:PF00561	PGSC:PGSC0003DMG400003197	RefSeq:XP_006343682.1
SEG:seg	SUPFAM:SSF53474	UniParc:UPI0002956B52	UniProt:M0ZUD5	MapMan:35.2	:

Description

Protein bem46 [Source:PGSC_GENE;Acc:PGSC0003DMG400003197]

Coordinates

chr7:+:383186..389794

Molecular Weight (calculated)

33426.2 Da

IEP (calculated)

9.386

GRAVY (calculated)

-0.315

Length

295 amino acids

Sequence
(BLAST)

001: MGNVTAGVAA KFAFFPPEPP TYEVFKDEDG RVCFSGITAD KNVNVHLLDT KGGNKIVATF WKHPSGRFTL LYSHGNAADL GQMIDLFVEL RAHLRVNIMC
101: YDYTGYGGSS GKPSEFNTYH DIEAVYNCLK SEYSIKQEDI ILYGQSVGSG PTLHLASRLQ RLRAIVLHSA ILSGIRVLYP VKMTFWFDIF KNIDKIQKVS
201: CPVLVIHGTS DEVVDFSHGK RLWELAKEKY DPLWVEGGGH CNLETFPEYI KHMRKFVNAM EKHSFSKRNK GRLSQAPSIT ESKHNRCLRF GKRQK

Best Arabidopsis Sequence Match ( AT4G31020.2 )
(BLAST)

001: MGNVTSNVAA KFAFFPPEPA TYGVTKDDET GKLVFAGVSA DKNVEVHQLT TKSGNKVVAT FWRHPFARFT LLYSHGNAAD LGQMVELFIE LRAHLRVNIM
101: SYDYSGYGAS TGKPSEFNTY YDIEAVYSCL RSDYGIKQEE IILYGQSVGS GPTLHMASRL KRLRGVVLHS AILSGIRVLY PVKMTLWFDI FKNIDKIRHV
201: NSQVLVIHGT NDEIVDLSHG KRLWELAKEK YDPLWVKGGG HCNLETYPEY IKHLKKFVNA MEKLSLTNPP PKQLTNEPSI TETKHNRCLK FGKR

Arabidopsis Description

Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q84JV3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.