Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G393900.3 | Wheat | cytosol | 73.66 | 23.7 |
| TraesCS1A01G374100.1 | Wheat | cytosol | 72.04 | 22.64 |
| TraesCS1D01G380700.1 | Wheat | cytosol | 70.43 | 18.82 |
| TraesCS2B01G013500.2 | Wheat | nucleus | 38.17 | 18.49 |
| Os04t0117200-01 | Rice | cytosol | 35.48 | 15.94 |
| TraesCS6B01G067600.1 | Wheat | nucleus | 43.01 | 13.99 |
| EES02317 | Sorghum | cytosol | 25.27 | 11.72 |
| Zm00001d039489_P002 | Maize | nucleus | 21.51 | 10.75 |
| KRH36857 | Soybean | nucleus | 19.35 | 9.4 |
| KRH11849 | Soybean | nucleus | 18.82 | 9.14 |
| GSMUA_Achr8P19330_001 | Banana | nucleus | 19.89 | 8.92 |
| CDY57605 | Canola | nucleus | 10.22 | 8.68 |
| Solyc04g081450.2.1 | Tomato | nucleus | 16.67 | 8.64 |
| Bra016482.1-P | Field mustard | nucleus | 15.05 | 8.48 |
| OQU86794 | Sorghum | endoplasmic reticulum, nucleus, peroxisome, plastid | 24.19 | 8.38 |
| PGSC0003DMT400025536 | Potato | nucleus | 16.13 | 8.36 |
| VIT_18s0001g14300.t01 | Wine grape | nucleus | 16.67 | 8.18 |
| AT1G19980.1 | Thale cress | nucleus | 14.52 | 7.89 |
| CDY62942 | Canola | nucleus | 13.98 | 7.88 |
| CDY43422 | Canola | nucleus | 13.44 | 7.69 |
| Bra012201.1-P | Field mustard | nucleus | 12.37 | 6.91 |
| CDX83731 | Canola | nucleus | 12.37 | 6.57 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G394200.1 | EnsemblPlantsGene:TraesCS1B01G394200 | ncoils:Coil | PANTHER:PTHR35992 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr1B:+:626510735..626511781
Molecular Weight (calculated)
20907.3 Da
IEP (calculated)
4.496
GRAVY (calculated)
-0.746
Length
186 amino acids
Sequence
(BLAST)
(BLAST)
001: MSCGGGGAGA GDGGLAEWQR IYDRVEELAA GRARLEARNR TQHEFWDARD KAELSRSRWE VACRKLLPSD DPKLAELLQI DLEDSRTCEA LLDTENSELL
101: VQLKEDGTCV ELNENTADHE HTSGDLVSEL RKLKRTYETI YWNKDKEATE AVQKLQQKIE ELQVAACKKD DEIGIVQAEA STCINK
101: VQLKEDGTCV ELNENTADHE HTSGDLVSEL RKLKRTYETI YWNKDKEATE AVQKLQQKIE ELQVAACKKD DEIGIVQAEA STCINK
001: MLLTSRNEGV GIHADPKSFG FKTRILTPEE SWKLCEKIVF HRRDETGTLS EVRVDEDMEA MGKEMVTCCG GLPLAVKVLG GLLATKHTVP EWKRVYDNIG
101: PHLAGRSSLD DNLNSIYRVL SLSYENLPMC LKHCFLYLAH FPEYYEIHVK RLFNYLAAEG IITSSDDGTT IQDKGEDYLE ELARRNMITI DKNYMFLRKK
201: HCQMHDMMRE VCLSKAKEEN FLEIFKVSTA TSAINARSLS KSRRLSVHGG NALPSLGQTI NKKVRSLLYF AFEDEFCILE STTPCFRSLP LLRVLDLSRV
301: KFEGGKLPSS IGDLIHLRFL SLHRAWISHL PSSLRNLKLL LYLNLGFNGM VHVPNVLKEM QELRYLQLPM SMHDKTKLEL SDLVNLESLM NFSTKYASVM
401: DLLHMTKLRE LSLFITDGSS DTLSSSLGQL RSLEVLHLYD RQEPRVAYHG GEIVLNCIHL KELELAIHMP RFPDQYLFHP HLSHIYLWCC SMEEDPIPIL
501: ERLLHLKSVI LTFGAFVGRR MVCSKGGFPQ LCFLKLEELE ELEEWIVEEG RCHFFVL
101: PHLAGRSSLD DNLNSIYRVL SLSYENLPMC LKHCFLYLAH FPEYYEIHVK RLFNYLAAEG IITSSDDGTT IQDKGEDYLE ELARRNMITI DKNYMFLRKK
201: HCQMHDMMRE VCLSKAKEEN FLEIFKVSTA TSAINARSLS KSRRLSVHGG NALPSLGQTI NKKVRSLLYF AFEDEFCILE STTPCFRSLP LLRVLDLSRV
301: KFEGGKLPSS IGDLIHLRFL SLHRAWISHL PSSLRNLKLL LYLNLGFNGM VHVPNVLKEM QELRYLQLPM SMHDKTKLEL SDLVNLESLM NFSTKYASVM
401: DLLHMTKLRE LSLFITDGSS DTLSSSLGQL RSLEVLHLYD RQEPRVAYHG GEIVLNCIHL KELELAIHMP RFPDQYLFHP HLSHIYLWCC SMEEDPIPIL
501: ERLLHLKSVI LTFGAFVGRR MVCSKGGFPQ LCFLKLEELE ELEEWIVEEG RCHFFVL
Arabidopsis Description
LOV1Putative inactive disease susceptibility protein LOV1 [Source:UniProtKB/Swiss-Prot;Acc:O04093]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.