Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G373900.2 | Wheat | nucleus | 27.85 | 84.29 |
| TraesCS1B01G394200.1 | Wheat | cytosol, mitochondrion, nucleus | 23.7 | 73.66 |
| TraesCS1D01G380600.1 | Wheat | nucleus | 43.77 | 56.85 |
| TraesCS2B01G013500.2 | Wheat | nucleus | 20.24 | 30.47 |
| Os04t0117200-01 | Rice | cytosol | 21.8 | 30.43 |
| TraesCS6B01G067600.1 | Wheat | nucleus | 23.01 | 23.25 |
| Zm00001d039489_P002 | Maize | nucleus | 13.84 | 21.51 |
| EES02317 | Sorghum | cytosol | 13.32 | 19.2 |
| GSMUA_Achr8P19330_001 | Banana | nucleus | 12.28 | 17.11 |
| Solyc04g081450.2.1 | Tomato | nucleus | 10.55 | 16.99 |
| PGSC0003DMT400025536 | Potato | nucleus | 10.55 | 16.99 |
| OQU86794 | Sorghum | endoplasmic reticulum, nucleus, peroxisome, plastid | 14.53 | 15.64 |
| AT1G19980.1 | Thale cress | nucleus | 9.0 | 15.2 |
| Bra016482.1-P | Field mustard | nucleus | 8.65 | 15.15 |
| CDY57605 | Canola | nucleus | 5.71 | 15.07 |
| VIT_18s0001g14300.t01 | Wine grape | nucleus | 9.69 | 14.78 |
| CDY62942 | Canola | nucleus | 8.13 | 14.24 |
| CDY43422 | Canola | nucleus | 7.96 | 14.15 |
| KRH36857 | Soybean | nucleus | 9.17 | 13.84 |
| Bra012201.1-P | Field mustard | nucleus | 7.96 | 13.81 |
| KRH11849 | Soybean | nucleus | 9.0 | 13.58 |
| CDX83731 | Canola | nucleus | 7.96 | 13.14 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G393900.3 | EnsemblPlantsGene:TraesCS1B01G393900 | ncoils:Coil | SEG:seg | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr1B:-:626495888..626500390
Molecular Weight (calculated)
62991.5 Da
IEP (calculated)
4.700
GRAVY (calculated)
-0.550
Length
578 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSGGGDDDA GAGDGGRAEW QRIYDRVEAL AAGRARLEAR NRTQHEFWDA RDKINHSRLH QAELSRSRWE AACRELLPSD DPKLAELLES DLEDSRTCEA
101: LLDTENLELL VQLKEDGTCV ELNENTADHE HTSGDLISEL RKLKRIYETL LEGKLNELNS LDKENDNQKL KVAKSKTLKR KFASLSNIQS KEAGNCVETI
201: QENADHGAIA RDLRAELRKL KQAYETLSSN KDKEISAPLA VEDFLLNKLL RIDKDNAGLL KIKEVEAAQA NEAAQKLQQT VEELQVAVRY KDDEIGRLRA
301: EAGPLKIKEV EAAQASKAVQ MLQQSVEELQ VAVGNKDDEI GKLGAEAASV EKMVLTLEGK LLEMQSLVKE KNDEIQKLKN GQPESLKCKC ASSIPVVSIP
401: IPFQEFVRQM PLFDEWGLRP AGLEGPRENP ALVVPLPAVP AARPPEVDAG GRAPPSAAGA GAGEMMQPGA SETSAPEARV SCPEGVAGEM AQSKAPEVAA
501: PEAWVSSPEV EAGELARPDA PEVATPGAPP NDPDADALAS CASRLGPLRI NFEALRKMKP SGRAYRLLKP RMYIAIDE
101: LLDTENLELL VQLKEDGTCV ELNENTADHE HTSGDLISEL RKLKRIYETL LEGKLNELNS LDKENDNQKL KVAKSKTLKR KFASLSNIQS KEAGNCVETI
201: QENADHGAIA RDLRAELRKL KQAYETLSSN KDKEISAPLA VEDFLLNKLL RIDKDNAGLL KIKEVEAAQA NEAAQKLQQT VEELQVAVRY KDDEIGRLRA
301: EAGPLKIKEV EAAQASKAVQ MLQQSVEELQ VAVGNKDDEI GKLGAEAASV EKMVLTLEGK LLEMQSLVKE KNDEIQKLKN GQPESLKCKC ASSIPVVSIP
401: IPFQEFVRQM PLFDEWGLRP AGLEGPRENP ALVVPLPAVP AARPPEVDAG GRAPPSAAGA GAGEMMQPGA SETSAPEARV SCPEGVAGEM AQSKAPEVAA
501: PEAWVSSPEV EAGELARPDA PEVATPGAPP NDPDADALAS CASRLGPLRI NFEALRKMKP SGRAYRLLKP RMYIAIDE
001: MVVKSVSGDS SERENWETIF KSLVKILQTK QDQLESLLKD KKILESEIKT NNENWLSDVR NYEDQLSLMM KEIETTKMFQ LLETYKSNLL CGLKEKDRSL
101: CNLKLEHSLD ELKDFKAWFD FLTLNTNVES VSGNSEGTAI KSLEAKIRKL KLEYEKLASE KKCEVSDLLR ENGFAWNQFK CIESEFTDKL KRKDDEIVQA
201: NTKISSLISY QEQLQSSNQE KDETISRLKA KMAEMETNST KKDEEISKLT RDLESAKKSR GFTPVLTRCT KLEKRSNGNT VGSHISTKKD KSAASTTNEK
301: VSKSSKRKRA KNMTPVSVSE VPKLFTSTFR LPKLKSPSNG AI
101: CNLKLEHSLD ELKDFKAWFD FLTLNTNVES VSGNSEGTAI KSLEAKIRKL KLEYEKLASE KKCEVSDLLR ENGFAWNQFK CIESEFTDKL KRKDDEIVQA
201: NTKISSLISY QEQLQSSNQE KDETISRLKA KMAEMETNST KKDEEISKLT RDLESAKKSR GFTPVLTRCT KLEKRSNGNT VGSHISTKKD KSAASTTNEK
301: VSKSSKRKRA KNMTPVSVSE VPKLFTSTFR LPKLKSPSNG AI
Arabidopsis Description
Cytomatrix protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q84JE5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.