Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY43422 | Canola | nucleus | 67.25 | 70.77 |
| CDY57605 | Canola | nucleus | 44.74 | 69.86 |
| Bra012201.1-P | Field mustard | nucleus | 67.54 | 69.37 |
| Bra016482.1-P | Field mustard | nucleus | 63.74 | 66.06 |
| CDY62942 | Canola | nucleus | 62.87 | 65.15 |
| CDX83731 | Canola | nucleus | 60.23 | 58.86 |
| VIT_18s0001g14300.t01 | Wine grape | nucleus | 44.74 | 40.37 |
| PGSC0003DMT400025536 | Potato | nucleus | 37.43 | 35.65 |
| Solyc04g081450.2.1 | Tomato | nucleus | 36.84 | 35.1 |
| KRH36857 | Soybean | nucleus | 38.6 | 34.46 |
| KRH11849 | Soybean | nucleus | 37.13 | 33.16 |
| GSMUA_Achr8P19330_001 | Banana | nucleus | 28.07 | 23.13 |
| TraesCS2B01G013500.2 | Wheat | nucleus | 24.56 | 21.88 |
| TraesCS2D01G008300.2 | Wheat | nucleus | 23.68 | 21.15 |
| TraesCS2A01G007200.1 | Wheat | nucleus | 23.39 | 21.0 |
| Os04t0117200-01 | Rice | cytosol | 23.98 | 19.81 |
| EES02317 | Sorghum | cytosol | 21.64 | 18.45 |
| Zm00001d039489_P002 | Maize | nucleus | 19.59 | 18.01 |
| HORVU2Hr1G001310.16 | Barley | cytosol | 20.76 | 16.36 |
| TraesCS1B01G394200.1 | Wheat | cytosol, mitochondrion, nucleus | 7.89 | 14.52 |
| TraesCS1A01G373900.2 | Wheat | nucleus | 7.89 | 14.14 |
| TraesCS6A01G051100.1 | Wheat | nucleus | 14.91 | 13.64 |
| TraesCS6B01G067600.1 | Wheat | nucleus | 16.67 | 9.97 |
| OQU86794 | Sorghum | endoplasmic reticulum, nucleus, peroxisome, plastid | 15.5 | 9.87 |
| TraesCS1B01G393900.3 | Wheat | cytosol | 15.2 | 9.0 |
| TraesCS1A01G374100.1 | Wheat | cytosol | 15.2 | 8.78 |
| TraesCS1D01G380600.1 | Wheat | nucleus | 11.4 | 8.76 |
| TraesCS1D01G380700.1 | Wheat | cytosol | 17.25 | 8.48 |
Protein Annotations
| MapMan:35.2 | EntrezGene:838587 | ProteinID:AEE29919.1 | ArrayExpress:AT1G19980 | EnsemblPlantsGene:AT1G19980 | RefSeq:AT1G19980 |
| TAIR:AT1G19980 | RefSeq:AT1G19980-TAIR-G | EnsemblPlants:AT1G19980.1 | TAIR:AT1G19980.1 | Unigene:At.41727 | EMBL:BT003883 |
| EMBL:BT004950 | ncoils:Coil | GO:GO:0008150 | RefSeq:NP_173427.1 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PANTHER:PTHR35992 | UniProt:Q84JE5 | UniParc:UPI000000C1BF | SEG:seg | : |
Description
Cytomatrix protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q84JE5]
Coordinates
chr1:+:6933015..6935053
Molecular Weight (calculated)
39100.6 Da
IEP (calculated)
9.661
GRAVY (calculated)
-0.793
Length
342 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVKSVSGDS SERENWETIF KSLVKILQTK QDQLESLLKD KKILESEIKT NNENWLSDVR NYEDQLSLMM KEIETTKMFQ LLETYKSNLL CGLKEKDRSL
101: CNLKLEHSLD ELKDFKAWFD FLTLNTNVES VSGNSEGTAI KSLEAKIRKL KLEYEKLASE KKCEVSDLLR ENGFAWNQFK CIESEFTDKL KRKDDEIVQA
201: NTKISSLISY QEQLQSSNQE KDETISRLKA KMAEMETNST KKDEEISKLT RDLESAKKSR GFTPVLTRCT KLEKRSNGNT VGSHISTKKD KSAASTTNEK
301: VSKSSKRKRA KNMTPVSVSE VPKLFTSTFR LPKLKSPSNG AI
101: CNLKLEHSLD ELKDFKAWFD FLTLNTNVES VSGNSEGTAI KSLEAKIRKL KLEYEKLASE KKCEVSDLLR ENGFAWNQFK CIESEFTDKL KRKDDEIVQA
201: NTKISSLISY QEQLQSSNQE KDETISRLKA KMAEMETNST KKDEEISKLT RDLESAKKSR GFTPVLTRCT KLEKRSNGNT VGSHISTKKD KSAASTTNEK
301: VSKSSKRKRA KNMTPVSVSE VPKLFTSTFR LPKLKSPSNG AI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.