Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G113400.1 | Wheat | plastid | 98.88 | 98.88 |
| TraesCS1B01G132100.1 | Wheat | plastid | 98.31 | 98.31 |
| HORVU1Hr1G024580.5 | Barley | plastid | 98.03 | 94.58 |
| Os05t0168300-01 | Rice | plastid | 87.36 | 87.61 |
| KXG21417 | Sorghum | plastid | 85.39 | 84.92 |
| Zm00001d037512_P001 | Maize | cytosol | 78.93 | 69.9 |
| CDY69318 | Canola | cytosol | 17.42 | 69.66 |
| GSMUA_Achr10P... | Banana | plastid | 69.94 | 69.17 |
| AT3G10970.1 | Thale cress | plastid | 63.48 | 61.92 |
| CDY00981 | Canola | plastid | 62.08 | 61.05 |
| KRG97648 | Soybean | plastid | 62.36 | 60.82 |
| CDY08561 | Canola | plastid | 61.52 | 60.16 |
| Bra029883.1-P | Field mustard | plastid | 61.52 | 60.16 |
| VIT_13s0067g02440.t01 | Wine grape | plastid | 60.67 | 60.0 |
| KRH31223 | Soybean | plastid | 61.52 | 59.84 |
| Solyc06g050310.2.1 | Tomato | plastid | 60.11 | 59.61 |
| TraesCS4A01G307800.1 | Wheat | plastid | 25.84 | 24.15 |
| TraesCS2A01G409700.1 | Wheat | plastid | 22.47 | 23.19 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G111900.1 | EnsemblPlantsGene:TraesCS1A01G111900 | Gene3D:1.10.150.240 | Gene3D:3.40.50.1000 | InterPro:HAD-like_sf | InterPro:HAD_sf |
| InterPro:IPR023198 | InterPro:IPR023214 | InterPro:PGP-like_dom2 | PANTHER:PTHR18901 | PANTHER:PTHR18901:SF29 | PFAM:PF13419 |
| SEG:seg | SUPFAM:SSF56784 | TIGR:cd07505 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr1A:-:113538311..113541488
Molecular Weight (calculated)
40295.5 Da
IEP (calculated)
6.715
GRAVY (calculated)
-0.265
Length
356 amino acids
Sequence
(BLAST)
(BLAST)
001: MESCSFRTAT SPSPFPSAPS SSSSARVPCP SLRFARARNG RQMRMRRMAS GFDAFPPLPG KVFVEETIGA EYGEGFETFR MDGPLNIDVD YLNEKLQECF
101: LQRIRHAMKP DEAFGLIFSW DNVIADTDSL KLDAWRQLAL EEGKDIPTAA HIQKSILHGA ADHVLRKVLY WAKEDDQMER LKARLIELYY ESLFRLDTPV
201: EGLREWLDAV RTAGIPCAVA SSLDRRCMVE ALDRMSLSKY FKAIVTDEDD MESIAHRFLS AAVKLDRKPS KCIVFEDDPR GVTAAHNCTM MAVSLIGAHP
301: AYELEQADLA VARYSELSVI NLRRMFAHKG LSFMDMQKQI IERSPPKRKL TVDTIF
101: LQRIRHAMKP DEAFGLIFSW DNVIADTDSL KLDAWRQLAL EEGKDIPTAA HIQKSILHGA ADHVLRKVLY WAKEDDQMER LKARLIELYY ESLFRLDTPV
201: EGLREWLDAV RTAGIPCAVA SSLDRRCMVE ALDRMSLSKY FKAIVTDEDD MESIAHRFLS AAVKLDRKPS KCIVFEDDPR GVTAAHNCTM MAVSLIGAHP
301: AYELEQADLA VARYSELSVI NLRRMFAHKG LSFMDMQKQI IERSPPKRKL TVDTIF
001: MDCSCSTRPS SLLISSEPSF RFPHSNFSSN LSFQIPKDTK LVKQRLVVRS SSGSDYQNGD VNGFPLKPNK LFMQEAIGAE YGEGFETFRQ DGPLKVDVDF
101: WNEKLQDGFL QRIRYAMKPD EAYGLIFSWD NVVADTRSLK LEAWKQLAAE EGKEITEEVD IQRLMLYAGA DHVLRKVLFW EKTQSKIDRL KLRLSEIYYD
201: SLLKLTEPKE GLRDWLDAVT TARIPCAVVS NLDRKNMINA LERMGLQKYF QAVVSEEDGM ESIAHRFLSA AVKLDRKPSK CVVFEDDPRG ITAAHNCTMM
301: AVGLIGAHRA YDLVQADLAV GNFYELSVIN LRRLFANKGS TFMDHEKQII EKSPPKRKLT IDTIF
101: WNEKLQDGFL QRIRYAMKPD EAYGLIFSWD NVVADTRSLK LEAWKQLAAE EGKEITEEVD IQRLMLYAGA DHVLRKVLFW EKTQSKIDRL KLRLSEIYYD
201: SLLKLTEPKE GLRDWLDAVT TARIPCAVVS NLDRKNMINA LERMGLQKYF QAVVSEEDGM ESIAHRFLSA AVKLDRKPSK CVVFEDDPRG ITAAHNCTMM
301: AVGLIGAHRA YDLVQADLAV GNFYELSVIN LRRLFANKGS TFMDHEKQII EKSPPKRKLT IDTIF
Arabidopsis Description
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J510]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.